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### Operating System
CentOS 7
[DEMO.wf-human-cnv-report_qdnaseq.pdf](https://github.com/epi2me-labs/wf-human-variation/files/15419413/DEMO.wf-human-cnv-report_qdnaseq.pdf)
[DEMO.wf-human-cnv-repo…
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This is a weird edge case I found with the output of GLNexus jointcalling. I have created an extreme toy example here since I found the issue in non-public data and the memory error was sporadic there…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise 8.x
### Workflow Version
v2.0.0
### Workflow Execution
Other (please describe)
### EPI2ME Version
_N…
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 20.04
### Workflow Version
v2.2.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No…
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Comment from Katherine on genetic variation methods: Did you filter the SNPs by missing data or minor allele frequency prior to comparisons? If so, provide those values here, even if they are a defaul…
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
v2.0.0-g52e3698
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
nex…
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Hi Yun,
I recently run seqmule in quick mode with the following commands to test the installation-
seqmule pipeline -a normal_R1.fastq.gz -b normal_R2.fastq.gz -prefix example -N 2 -capture default -t…
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
v1.8.3-g93a02af
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
nex…
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Often times, GATK cannot calculate a particular annotation value for every variant site. When this happens, GATK uses a 'dot' to represent the missing value (e.g. BaseQRankSum=.). When this occurs, cy…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.8.3
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
# comman…