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sr320
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ceabigr
Workshop on genomic data integration with a emphasis on epigenetic data (FHL 2022)
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Can we delete RAnalysis Directory?
#112
sr320
opened
3 weeks ago
0
Offspring data
#111
sr320
opened
2 months ago
1
S2 file blank
#110
yaaminiv
closed
2 months ago
2
Add information for SNP filtering to methods
#109
yaaminiv
closed
3 months ago
11
Add total number of SNPs used in genetic variation analysis
#108
yaaminiv
closed
3 months ago
1
explore gene enrichment results and relationship to reproduction
#107
yaaminiv
opened
3 months ago
0
plot expression/fold-change on the y-axis instead of PC score
#106
yaaminiv
opened
3 months ago
1
Table with commonly enriched GO terms across all enrichment analyses
#105
yaaminiv
closed
3 months ago
4
Create Master table with ALL information
#104
sr320
opened
3 months ago
0
Revise ASCA figures to have the right colors
#103
AHuffmyer
closed
3 months ago
1
Functional enrichment analysis of genes that show differential alternative splicing patterns between treatments
#102
AHuffmyer
closed
3 months ago
10
Try time series analysis on exon data
#101
sr320
opened
3 months ago
0
Submit sequencing data to NCBI
#100
kubu4
closed
3 months ago
3
Number of DML in genes with shifts in pred transcript/change to max transcript
#99
yaaminiv
closed
3 months ago
3
GO slim terms for genes
#98
sr320
closed
3 months ago
1
Functional enrichment of kallisto/Deseq2 derived genes
#97
sr320
opened
4 months ago
0
Model methy influence on change in max transcript
#96
sr320
closed
3 months ago
6
Enrichment analysis for DMLs
#95
sr320
closed
3 months ago
3
Function enrichment for change max # transcript & predominant isoform
#94
sr320
closed
3 months ago
11
supplemental table with gene and transcript expression stats results
#93
sr320
closed
3 months ago
12
Adding exp design and chemistry results
#92
sr320
closed
4 months ago
1
Reformat exon data for WGCNA analysis
#91
sr320
closed
3 months ago
8
examine potential for ASCA for exon analysis
#90
sr320
closed
3 months ago
8
Figures needed for paper
#89
sr320
closed
3 months ago
10
Decide on minimum read count for exon expression
#88
kubu4
closed
4 months ago
13
Request Access to RStudio Server
#87
dani-mccann
closed
6 months ago
2
Create exon regression per gene
#86
kubu4
closed
4 months ago
4
Conduct spurious transcription analysis
#85
yaaminiv
closed
4 months ago
7
Run a correlation between genetic distance and gene expression & methylation distance matrices
#84
AHuffmyer
closed
8 months ago
4
Genetic analysis
#83
yaaminiv
closed
4 months ago
0
Update mixomics analysis
#82
AHuffmyer
closed
4 months ago
3
Run Blast with lncRNA against genome
#81
sr320
opened
11 months ago
0
WGCNA of lncRNA and genes
#80
sr320
opened
11 months ago
0
Run DESeq on lncRNA
#79
sr320
opened
11 months ago
1
Revised SNP list
#78
yaaminiv
closed
4 months ago
2
Read integration sections of methods and results
#77
yaaminiv
closed
4 months ago
1
BIG-IP Edge Client credentials
#76
yaaminiv
closed
1 year ago
1
Mean methylation for genes for each treatment
#74
sr320
closed
4 months ago
0
PCAs of methylation and gene exp data
#73
yaaminiv
opened
1 year ago
5
Generate CIRCOS plot
#70
sr320
closed
4 months ago
3
Compiling genetic data
#69
sr320
closed
1 year ago
5
Run mixomics and two simple files
#68
sr320
closed
4 months ago
6
Generate gene counts from RNASeq using Kallisto
#66
laurahspencer
closed
4 months ago
0
QC / next step on RNAseq SNPs
#65
sr320
closed
4 months ago
0
Write up DML results
#64
sr320
closed
4 months ago
0
RStudio server working for other people?
#63
laurahspencer
closed
2 years ago
8
Provide hard filter values for RNAseq SNPs
#62
sr320
closed
2 years ago
1
UW sponsored account expired
#60
ksil91
closed
2 years ago
1
Generate coverage2cytosine reports
#59
jarcasariego
closed
2 years ago
3
Increasing threads in GATK?
#58
sr320
closed
2 years ago
7
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