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sr320
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ceabigr
Workshop on genomic data integration with a emphasis on epigenetic data (FHL 2022)
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Generate correlations between expression and methylation at the gene level
#57
AHuffmyer
closed
4 months ago
0
Confirm/fix URLs to files in Gene Expression Data Types wiki
#56
kubu4
closed
2 years ago
2
Update Gene Expression Data files
#53
sr320
closed
2 years ago
14
Install GATK on Raven
#52
kubu4
closed
2 years ago
1
Test code reproducibility for RNAseq data
#50
kubu4
closed
2 years ago
2
Workshop summary for NRSP-8
#49
shellywanamaker
closed
4 months ago
0
Workshop summary for E5
#48
JillAshey
closed
4 months ago
0
install nextflow on Raven
#47
shellywanamaker
closed
2 years ago
3
Compile and summarize all papers in bivalves where DNA methylation AND gene expression is examined
#46
sr320
closed
4 months ago
0
Pull out string in tab file
#45
sr320
closed
4 months ago
1
Missing samples from the gene_fpkm.csv file
#44
laurahspencer
closed
2 years ago
5
Outline manuscript
#43
sr320
closed
2 years ago
1
Straighten up repo organization
#42
sr320
closed
4 months ago
2
Determine Correlation of TE copy number and TE methylation level
#41
sr320
opened
2 years ago
2
Determine relationship of isoform count per gene and gene methylation
#40
sr320
closed
4 months ago
0
CG_motif file location?
#39
jarcasariego
closed
2 years ago
1
pca of methylation data
#38
ksil91
closed
4 months ago
3
Raw per-gene counts from RNASeq data (not normalized)
#37
laurahspencer
closed
2 years ago
2
Determine if TE name are unique
#36
sr320
opened
2 years ago
1
install numpy for python3 in raven
#35
jarcasariego
closed
2 years ago
6
Remake genome feature tracks
#34
yaaminiv
closed
4 months ago
3
awk code for replacing loci %meth where snp with 0
#33
shellywanamaker
closed
2 years ago
2
Run intersectbed with 10methylation and TE track
#32
sr320
closed
2 years ago
3
% methylation matrix of intersecting loci ?
#31
sr320
closed
2 years ago
1
Replace % meth data based on SNP presence
#30
yaaminiv
closed
2 years ago
4
BAM files for gene expression analysis
#29
JillAshey
closed
2 years ago
5
eQTL analysis using methylation instead of SNPs
#28
laurahspencer
opened
2 years ago
2
Calculate DMGs for female gonad sample
#27
hputnam
closed
4 months ago
0
Generate count matrix of sequence counts per exon per gene
#26
AHuffmyer
closed
4 months ago
4
Determine TE copy number variation
#25
sr320
closed
2 years ago
5
Access Request RStudio Server - Putnam
#24
hputnam
closed
2 years ago
6
Characterize lncRNA expression patterns
#23
sr320
opened
2 years ago
2
Identify unmapped reads in BS DNA data
#22
sr320
closed
4 months ago
5
Credentials for BIG-IP Edge Client
#20
yaaminiv
closed
2 years ago
4
I need authorization for Husky OnNet
#19
laurahspencer
closed
2 years ago
2
Requesting access to UW RStudio server
#17
JillAshey
closed
2 years ago
31
Requested Access to RStudio Server
#16
emmastrand
closed
2 years ago
9
Identify SNPs in C.virginica adult gonad RNAseq data
#15
kubu4
opened
2 years ago
1
Problem downloading Husky OnNet
#14
AHuffmyer
closed
2 years ago
22
Calculate gene-level methylation statistics in oyster data
#13
sr320
closed
4 months ago
7
Use BS data (bam) to examine copy number variation
#12
sr320
closed
2 years ago
2
Identify SNPs in BS data
#10
sr320
closed
4 months ago
12
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