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This often has richer text to be used for NLP
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Hello there!
I've been testing the VIRify v2.0 and I realised that the taxonomic annotation on the GFF file has the ranks inverted.
For instance:
taxonomy=Entomopoxvirinae;Poxviridae;Chitovira…
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When I run "nextflow pull EBI-Metagenomics/emg-viral-pipeline"
I get error :
Checking EBI-Metagenomics/emg-viral-pipeline ...
Project config file is malformed -- Cause: Compile failed for so…
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A good starting point is Pfam_SARS. I reviewed it a few weeks ago, and IIRC it has pretty good coverage of Betacov genes, but doesn't include some of the genes towards the 3' end found in other genera…
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> In fact, for three of these four animal coronaviruses, the strongest correlation between the number of viral and animal reads is for the animal species known to be infected with the virus...
The …
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Many thanks for your job! I have almost 12T data that needs to be clustered by the Markov Cluster algorithm, do you have any suggestion?
[mclIO full] reading
...................................…
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What is the best way to edit the .yaml file to use the viral genome analysis sections (assembly/intrahost variation)?
Would input files need to be depleted already?
Which dir would the input file…
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Dears,
I'm trying to run a simple test with one of my fasta. But, in the step `preprocess:rename` never ends (11 hours of execution without progress).
the log:
```
Launching `https://github.c…
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- in the previous analysis, only minikraken database was used for computational purpose
- however, for the accuracy of the evaluation, both **standard database for kraken2** and a **custom database b…
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Meta-issues for database-related experimental design discussions
- [x] How many genomes?
- [x] Which genomes to select?