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ababaian
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serratus
Ultra-deep search for novel viruses
http://serratus.io
GNU General Public License v3.0
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Serratus-Lite summarizer script
#278
TWilson1012
closed
1 month ago
2
BUG rows on srarun missing values on the spots column
#277
almosnow
closed
7 months ago
1
question about cloud budget
#276
charlie2021cc
opened
7 months ago
1
Adding new column to the Serratus search?
#275
mmsonder
closed
8 months ago
1
scRNA-seq analysis with Serratus
#274
malonzm1
closed
10 months ago
1
Website is down
#273
austinreidmanny
closed
11 months ago
2
Tree data
#272
ellasiera
closed
1 year ago
2
Bug in the SRA meta-data analysis from palmID
#271
PuravG
opened
1 year ago
0
Update namespace refs from lovelywater to lovelywater2
#270
lukepereira
closed
1 year ago
1
Fix broken Slack link. Replace it with the mailto link from the README
#269
TheBatmanofButler
closed
1 year ago
0
Fix INSDC policy link
#268
tfmorris
closed
1 year ago
0
Update CONTRIBUTING.md
#267
kinow
closed
1 year ago
1
additional things to migrate to lovelywater:
#266
rchikhi
opened
1 year ago
0
palmID viral RdRp analysis crash
#265
FBeguier
closed
1 year ago
10
Try to get `terraform plan` working with the latest Terraform
#264
brietaylor
closed
1 year ago
0
Is Serratus running on most recent SRAs?
#263
centaria
closed
2 years ago
4
Speed up SRA download: aws s3 cp or sratoolkit?
#262
centaria
closed
2 years ago
7
Novel viruses identified by Serratus
#261
aninditaces
closed
2 years ago
2
all serratus assemblies (60k accessions)
#260
rchikhi
opened
2 years ago
13
Hello! Many parts of this tutorial “Running Serratus”are confusing to me. Could you be more specific?
#259
NickShanyt
opened
2 years ago
6
Phylogenetic and taxonomic analyses for any viral contigs
#258
eul2021
closed
2 years ago
5
Download fasta file
#257
MjelleLab
opened
2 years ago
10
Brief SRA metadata for a subset of SRR ids
#256
eul2021
closed
2 years ago
3
Deal with suppressed phage runs
#255
taltman
closed
2 years ago
1
Migrate improved CoV assemblies to lovelywater, and annotate them
#254
taltman
opened
2 years ago
0
New Base Image added for use in Dockerfile
#253
thesharmanitish
opened
2 years ago
2
all RdRP+ macro/micro contigs
#252
rchikhi
opened
3 years ago
1
migrate RdRP data to lovelywater
#251
rchikhi
closed
3 years ago
5
Update contributors list
#250
victorlin
closed
3 years ago
1
diamond development branch
#249
ababaian
closed
3 years ago
1
TODO: Case study for CoV in environmental samples
#248
ababaian
opened
3 years ago
0
all new nido/cov assemblies
#247
rchikhi
opened
3 years ago
2
assemblies of 1k random SRAs from novel_id90.fa
#246
rchikhi
opened
3 years ago
10
Please run SRR12432009
#245
bioscienceresearch
closed
3 years ago
0
Please Run SRA SRR11806578
#244
bioscienceresearch
closed
3 years ago
0
Please run SRA SRR11085797
#243
bioscienceresearch
closed
3 years ago
4
all .pro assemblies
#242
rchikhi
opened
3 years ago
10
rVert assemblies
#241
rchikhi
opened
3 years ago
5
Summary file version inconsistencies
#240
victorlin
opened
3 years ago
3
Dicistro assemblies
#239
rchikhi
opened
3 years ago
16
Quenya assemblies
#238
rchikhi
opened
3 years ago
5
Migrate assembly data to lovelywater
#237
ababaian
opened
3 years ago
23
Ignore not crash if malformed pro lines
#236
rcedgar
opened
3 years ago
0
Update serratus_psummarizer.py
#235
rcedgar
closed
3 years ago
0
Scheduler scaling
#234
brietaylor
closed
3 years ago
0
Save metrics data to an external database between runs.
#233
brietaylor
closed
3 years ago
0
Dev diamond merge
#232
ababaian
closed
3 years ago
1
Expand the set of Nidovirales-associated Pfam HMMs for contig identification
#231
taltman
opened
3 years ago
2
Assemblies were updated (7/28) due to two bugs
#230
rchikhi
closed
3 years ago
7
OTU pipeline must delete '.' insertion character from Pfam a2m-formatted output produced by darth
#229
taltman
closed
3 years ago
1
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