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**WDL Graph enhancements:**
- [x] _Tasks_ from imported WDL files should be shown in the list of existing tasks in the *Properties > Document Tasks* list and *Actions > Add Call*.
- [x] It would…
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One thought I'd had on making imports a bit more intuitive is to allow an optional `namespace` field at the top of a WDL file like this:
```wdl
version 1.X
namespace "bam_processing/workflows"
…
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I was just battening down miniwdl's parsing of escape sequences in string literals, and got tripped up here:
https://github.com/biowdl/tasks/blob/c92755e510723da731ba92637c41e58c8490b5fc/common.wdl…
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Finally, we plan to migrate the WDL `tools` to a new repository. There are several tasks required before we can make the change.
- [ ] Review open PRs on workflows
- [ ] Update documentation (apparen…
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We recently switched to v1.1 of the WDL spec for our WDL. We noticed that the following WDL definition in one of our tasks is considered valid by `miniwdl check` in a `version 1.1` document.
```
…
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:cool:
### :pushpin: Explain the Request
This is low priority, but I just realized that the user does not have the ability to change SISTR optional inputs for the various TheiaProk workflows sin…
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## Feature Request
### Desired behaviour
There are certain WDL file scenarios that the womtool accepts, but we might find weird. Instead of throwing errors in these scenarios (to avoid deviating fr…
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https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline/blob/70025d47d2aea47043effa63f4f5d619004c9c7c/tasks/Qc.wdl#L319
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NMDC has a FY24 Q2 milestone of 'Assembly support for long-read sequence data'. JGI has an existing workflow in WDL which NMDC will adopt.
https://code.jgi.doe.gov/BFoster/jgi_meta_wdl/-/blob/mast…
aclum updated
2 months ago
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**Is your feature request related to a problem? Please describe.**
Workflows with HTTP imports are not very reproducible. It should be discouraged.
**Describe the solution you'd like**
Add to the bes…