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gatk-workflows
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five-dollar-genome-analysis-pipeline
Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
https://gatk.broadinstitute.org/hc/en-us
BSD 3-Clause "New" or "Revised" License
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update google bucket references [DFE-6]
#29
mmorgantaylor
closed
4 years ago
0
PCR INDEL model
#28
mp15
opened
4 years ago
0
GATK3 haplotype caller
#27
gevro
closed
4 years ago
1
sleep after creating files
#26
digrigor
closed
4 years ago
1
The flow with example files fails
#25
mgcam
opened
5 years ago
3
Dev
#24
bshifaw
closed
5 years ago
0
Localization can be made optional for more stages.
#23
darkskiez
opened
5 years ago
0
Dev
#22
bshifaw
closed
5 years ago
0
BamToGvcf.wdl typo in local import
#21
lmtani
closed
5 years ago
1
What is "fingerprint_genotypes_file"
#20
JavisPeng
closed
5 years ago
1
Dev
#19
bshifaw
closed
5 years ago
0
Qc.CheckPreValidation runtime section has duplicate 'docker' keys
#18
mlin
opened
5 years ago
1
BamToGvcf.wdl typo in import URI
#17
mlin
closed
5 years ago
1
Dev
#16
bshifaw
closed
5 years ago
0
Wdlupdate
#15
bshifaw
closed
5 years ago
0
what is "five-dollar- genome-analysis" mean?
#14
runningsnail2333
closed
5 years ago
1
what's "File?" ? Is that a coding bug?
#13
CN-Geminghui
closed
5 years ago
1
Wdlupdate
#12
bshifaw
closed
6 years ago
0
Fail if empty ref_alt ?
#11
jpaaso
closed
5 years ago
1
Hg37 support
#10
jpaaso
closed
6 years ago
2
SamtoFastq errror when running locally
#9
jaideepjoshi
closed
5 years ago
2
start fastq with gatk4
#8
biofer
closed
6 years ago
0
Wdlupdate
#7
bshifaw
closed
6 years ago
0
Wdlupdate
#6
bshifaw
closed
6 years ago
1
Docker Image
#5
jjfarrell
closed
6 years ago
1
Wdlupdate
#4
bshifaw
closed
6 years ago
0
Wdlupdate
#3
bshifaw
closed
6 years ago
0
Add genotyping and filtering option to single-sample workflow
#2
ldgauthier
closed
6 years ago
2
Wdlupdate
#1
bshifaw
closed
6 years ago
0