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> @egonw In https://www.wikipathways.org/index.php/Pathway:WP3172, the pathway gastric pepsin release links to https://www.wikipathways.org/instance/WP2601, and Gastric Gastrin Release links to https:…
egonw updated
2 years ago
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YummyData expects a `Service Description` when requesting Turtle or RDF/XML from http://sparql.wikipathways.org/ which would look like:
```turtle
@prefix rdf: .
@prefix ns1: .
@prefix sd: …
egonw updated
4 years ago
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Which is needed downstream for nanopublications, but actually for any system that uses the citation expectations for WikiPathways outlined at http://www.wikipathways.org/index.php/How_to_cite_WikiPath…
egonw updated
4 years ago
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A collaborator (Nathan) would like to have a link to the current gpml archive that doesn't include the date (so doesn't change from month to month). Something like "http://data.wikipathways.org/curren…
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https://github.com/wikipathways/wikipathways-database/actions/runs/4776003043/jobs/8490733040
> [ 0.028] Info: Recognized format [Namespace: prefix "" is mapped to URI "http://pathvisio.org/GP…
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The link set should map URIs used in the WPRDF data set to URIs for the same small molecules in the CRS. Then input will be a list of HMDB, ChEBI, etc identifiers. The output will be a linkset where f…
egonw updated
8 years ago
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- [ ] check current issues: https://github.com/PathVisio/WP-plugin/issues
- [ ] discuss integration in core application
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1. go to any pathway
2. log in
3. edit pathway title
4. refresh
> Warning: Cannot modify header information - headers already sent by (output started at /home/wikipathways.org/mediawiki/includes…
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UI team is eager to work with the edge-level pathway information being returned by BTE via PFOCR as a KP. Currently, we just have a flat list of `values` including the figureUrl and PMCID. Ideally, t…
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Some possible gene sets:
- [ ] disease genetic associations (human only)
- [ ] drug binding (human only)
- [ ] tissue expression (data mostly from Bgee, human and mouse)
- [ ] genetic locus (P4…