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Ran into this while using diffxpy checking DE between all clusters in a sample:
Usage looks like:
```python
for cluster in np.unique(metadata['clusters']):
in_cluster = metadata['clusters'] …
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I'm curious if other tests such as weighted log-rank, generalized Wilcoxon, Peto-Peto m.m. can be implemented in the add_p function similar to ggsurvplot.
A reference for example: https://rpkgs.data…
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Hi, I noticed that in function StatKOAttributes, using the adjusted p-value from Wilcoxon rank-sum test or t-test to calculated Z-score of every KO. I wonder what if I used p-value generated from othe…
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How does the the Wilcoxon rank sum test has been calculated in PlatEMO?
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We use https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.wilcoxon.html in CS. At the moment, correction is on for one sample case (to be consistent with the R version), and correction i…
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* Enhancement: **Please remove the asymptotic version of the WMW and replace it with the exact test based on permutations**
* Purpose: Solving an issue that was already outlined almost 30 years …
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I think it would be nice if statsample could be restructured into many extensions...
so if you simply need the wilcoxon test, you do the following:
`require 'statsample/wilcoxon_test'`
I believe th…
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- [x] DESeq2
- [x] limmaVoom
- [x] edgeR
- [x] glm-pois
- [x] glm-quasipois
- [x] limma-voom
- [x] MAST
- [x] t-test
- [x] wilcoxon
- [ ] zinb-wave plus edgeR
- [ ] zinb-wave plus DESeq2
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As `model_parameters` shows group means for Welch two-sample test, it could also show group medians for Wilcoxon rank sum test.
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Dear All,
I had two questions concerning enrichment analysis and permulations.
1) With the function "fastwilcoxGMTall", is it correct to use a list of goterms and associated genes instead of pa…