theislab diffxpy issues

theislab / diffxpy

Differential expression analysis for single-cell RNA-seq data.

https://diffxpy.rtfd.io

BSD 3-Clause "New" or "Revised" License

193 stars 23 forks source link

issues

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discrete covariates

#230 wangjiawen2013 opened 3 months ago
0
ValueError: assignment destination is read-only

#229 SalvatoreRa opened 7 months ago
0
using noise_model other than NB

#228 j-bac opened 8 months ago
0
Error when using de.test.wald():

#227 SteffiHMuc opened 1 year ago
4
diffxpy [Multiple tests for each gene]--de.test.versus_rest: ValueError: setting an array element with a sequence.

#226 winglet0996 opened 1 year ago
1
Remove numpy type aliases

#225 dsm-72 closed 1 year ago
8
`np.float` deprecation raises AttributeError: module 'numpy' has no attribute 'float'.

#224 dsm-72 opened 1 year ago
5
Diffxpy returns log2fc and coef_mle values as dask array

#223 lippspatrick opened 1 year ago
3
Installation issue # Invalid version #

#222 GuiSeSanz opened 1 year ago
1
Some questions about description details

#221 HelloWorldLTY opened 1 year ago
0
ZeroDivisionError: float division by zero

#220 Simran-Sodhi opened 2 years ago
14
Catch up dev to master

#219 davidsebfischer closed 2 years ago
0
Preparing v0.8

#218 ilan-gold opened 2 years ago
3
RuntimeError: Cannot convert a sparse array to dense automatically. To manually densify, use the todense method.

#217 SimaDubnov opened 2 years ago
1
Using t-test for data with more than two groups.

#216 yiyang2002 opened 2 years ago
1
valueErroe("type %s not recognized")

#215 wubaosheng opened 2 years ago
0
preranking a gene list after using diffxpy

#214 sevlandais closed 2 years ago
0
de.test.versus_rest returns the wrong comparison for GLM tests

#213 eboileau opened 2 years ago
1
TypeError: full_like() got an unexpected keyword argument 'shape' when running de.test.wald()

#212 niklaslang opened 2 years ago
5
ValueError: assignment destination is read-only in de.test.wald with small examples

#211 MatthiasLienhard opened 3 years ago
1
Change to allow grouping order to be preserved

#210 adkinsrs closed 3 years ago
4
weights=np.array([x0.shape[0] / (x0.shape[0] + x1.shape[0]), ZeroDivisionError: division by zero

#209 eynullazada opened 3 years ago
0
enrich tutorial link broken

#208 raiblelab opened 3 years ago
0
Syntax error in partioned rank_test

#207 jhkliu42 opened 3 years ago
0
qval -> fdr_bh

#206 gokceneraslan opened 3 years ago
0
Possible to set reference condition for two_sample tests?

#205 adkinsrs opened 3 years ago
6
fix extraction of corf_loc_names when dmat is provided directly

#204 le-ander closed 3 years ago
0
TypeError: sum() got an unexpected keyword argument 'keepdims'

#203 Gibbsdavidl closed 3 years ago
4
TF1 InvalidArgumentError: Rank of input must be no greater than rank of output shape

#202 Hrovatin opened 3 years ago
0
ValueError: array must not contain infs or NaNs

#201 Zethson opened 3 years ago
1
pin sparse to 0.9.1

#200 Zethson closed 3 years ago
2
Documentation on reported log2fc when using continous predictor variables

#199 Hrovatin opened 3 years ago
0
Question regarding log2fc returned by differential expression Wald testing

#198 YousufYassouf opened 3 years ago
1
Is there a way to "constrain" specific constraints to be similar?

#197 Hrovatin closed 3 years ago
1
Include Wald test statistic in `test.summary()` for `test.wald`

#196 jggatter opened 3 years ago
0
ValueError: assignment destination is read-only

#195 Hrovatin opened 3 years ago
4
All arrays must be instances of SparseArray

#194 ealsop closed 3 years ago
6
Which correction is used for the rank sum test?

#193 ngolan1 opened 3 years ago
0
Correct constraint doc

#192 Hrovatin closed 3 years ago
0
Exaggerated estimates and low standard deviation

#191 Hrovatin opened 3 years ago
8
Fit model error in constraint_system_from_star

#190 Hrovatin opened 3 years ago
1
Constraints doc string

#189 Hrovatin opened 3 years ago
4
Can't set which group to compare to which using de.test.t_test or any other test

#188 Gabi86 opened 3 years ago
0
Raw counts for testing of continuous covariates

#187 dsg03 opened 3 years ago
0
ValueError: assignment destination is read-only

#186 gokceneraslan opened 3 years ago
2
numpy.linalg.LinAlgError: Singular matrix

#185 Hrovatin opened 3 years ago
0
Setting target/condition and reference value of factor_loc_totest

#184 Hrovatin opened 3 years ago
0
Extracting fitted mean and dispersion parameters

#183 ilibarra closed 3 years ago
2
de.fit.model raises ValueError: too many values to unpack (expected 2)

#182 ilibarra closed 3 years ago
1
enrich link broken in docs

#181 scottkall opened 4 years ago
0