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I want to add blacklist to my custom zebrafish ArchR genome. How can I do that?
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If your data exceed 16,000 rows or columns then it hits the default limits set by imagemagick which produces the following somewhat cryptic error:
```
Error in magick_image_write_frame(image, form…
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Hi,
I have a question about the peak calling and filtering processes of your manuscript. As far as I know, the cis-regulatory elements are approximately range to ~ 500 bp usually. So, some tools (e…
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Greetings developers!
We are using Portal for single-cell same-cell RNA/ATAC-seq integration. However, the output UMAP clusters seem not sufficiently integrated (cells from either assay do not over…
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I noticed you have replaced variable "name" with "annoName", could you please update it in function reference for the sake of usage?
```
addMotifAnnotations
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Hi
I am using ArchR to analysis scATAC and using MACS2 with ArchR to do peak calling.
However, I got this error:
Error in .checkMacs2Options(pathToMacs2) :
Macs2 Path (macs2) is out of date…
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Hello,
I'm calculating the co-accessibility of a specified cell type using addCoAccessibility with 'cellsToUse'. However, there is no output of , and no error is reported in the log. Could you please…
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Hi,
Thanks for developing this wonderful tool!
I wanna ask about dealing with snATAC_seq data with multiple samples.
I'm trying to follow the workflow in this. https://github.com/loosolab/TOBIAS/…
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Hi, guys,
i have tried to add the GeneIntegrationMatrix using the "addGeneIntegrationMatrix", unfortunately, it‘s erroring. the error is following:
Error Found Iteration 1 :
[1] "Error in…
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https://mp.weixin.qq.com/s/ZAgpFExgKY7Xj5Ich5NWCg
ixxmu updated
11 months ago