jokergoo EnrichedHeatmap issues

jokergoo / EnrichedHeatmap

make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.

http://jokergoo.github.io/EnrichedHeatmap/

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issues

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A heatmap with no signal

#87 jokergoo opened 3 months ago
0
only use exons as target

#86 jokergoo opened 4 months ago
1
enriched heatmap cut rows

#85 yamihn opened 7 months ago
0
Modification of the position of color bar

#84 ZixiaoWang17 opened 7 months ago
0
Scale two heatmaps with EnrichedHeatmap

#83 noelletnw closed 7 months ago
1
Collapsing replicates

#82 konsta-kukkonen opened 10 months ago
0
same y-aixs for concatenated heatmap

#81 gyanmishra opened 1 year ago
2
Correct calculation of enrich score

#80 stkmrc opened 1 year ago
0
how to show partition names at the leftmost when setting 3rd heatmap as main_heatmap

#79 olechnwin closed 1 year ago
1
Strange subscript out of bounds error

#78 yimingsun12138 opened 1 year ago
1
strange plot Enrichedheatmap

#77 yamihn opened 1 year ago
0
Strandness information of signal and targte GRanges seems ignored in the calculation of normalizeToMatrix

#76 SoManyPepople opened 1 year ago
1
Set order to row_split

#75 14stutzmanav closed 1 year ago
1
remove failed_rows from matrix

#74 Adnanhashim opened 1 year ago
1
Empty matrix

#73 michela12345 opened 1 year ago
1
color for anno_enriched

#72 olechnwin opened 2 years ago
2
speed up normalizeToMatrix

#71 olechnwin opened 2 years ago
2
to-do-list

#70 jokergoo opened 2 years ago
0
How To? color top annotation lines by row_split variable?

#69 malcook closed 1 year ago
3
Visualize multiple target regions in one graph

#68 xfchen0912 closed 2 years ago
2
Filtering matrices by range name

#67 jantusan closed 2 years ago
5
strand information

#66 MorillonLab closed 2 years ago
1
maybe use mode "s" for the average line chart?

#65 jokergoo opened 2 years ago
0
raster image too blur

#64 jokergoo opened 2 years ago
0
border line of the target regions

#63 jokergoo opened 2 years ago
0
plot multiple bigwig data in one heatmap?

#62 junjunlab opened 2 years ago
2
Smoothing methylation data causing very extreme values impacting visualization

#61 rauldiul closed 2 years ago
4
mean_mode error

#60 Jiang-cpu751 closed 3 years ago
5
Can't get the picture

#59 chenchen-eng closed 3 years ago
4
Image magick error for very large rasters

#58 RichardJActon closed 2 years ago
20
Question about target_ratio in normalizeToMatrix

#57 AstreChen closed 3 years ago
2
Trouble with scaling

#56 wilsoner2175 closed 3 years ago
5
Names of heatmap annotation

#55 dktanwar closed 3 years ago
1
white line in raster

#54 ClarissaFeuersteinAkgoz closed 3 years ago
9
Is there a way to only plot top curve?

#53 GRGong closed 4 years ago
1
how to use row_split and add annotation heatmap for the split

#52 olechnwin closed 3 years ago
3
Setting number of breaks

#51 dktanwar closed 3 years ago
9
annotation_legend_side does not work

#50 dktanwar closed 3 years ago
6
Question: Setting `lwd` for all heatmaps

#49 dktanwar closed 4 years ago
2
Height of column title box

#48 dktanwar closed 4 years ago
4
Problem splitting by more than two groups in newest version (1.18.0)

#47 dougbarrows closed 4 years ago
2
Strange V Shape when generating heatmap?

#46 Jome0169 closed 4 years ago
3
how can I manually cluster with EnrichedHeatMap?

#45 Yuxinagli closed 4 years ago
1
EnrichedHeatmap() Error: You should have at least two distinct break values.

#44 francisfa closed 4 years ago
3
output bed regions along with each window coverage/score

#43 itsvenu closed 4 years ago
2
About the "row_split" parameter？

#42 francisfa closed 4 years ago
2
Error in Heatmap(mat, col, row_order = row_order, cluster_columns = FALSE, : unused argument (top_annotation_height = top_annotation_height)

#41 crazyhottommy closed 5 years ago
2
Custom ticks and label position at x-axis

#40 ATpoint closed 4 years ago
1
Meaning of rows on heatmap

#39 AYYYang closed 4 years ago
1
Mixed colors in top_annotations

#38 CharlesJB closed 5 years ago
10