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Hello,
I am able to load surface files by i.e. converting Freesurfer surface file to gifti "mris_convert lh.pial lh.pial.gii".
However, I'm not clear how to view overlays on top of the surface vi…
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Hello Nibabel team,
I am trying to get some help in information about what is causing this failure ```xml.parsers.expat.ExpatError: no element found: line 1, column 0``` . The error occurred while …
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- non-visual qa, i.e. automatic flagging
- saving to cifti
- generating conversions with (when available) and without fieldmap correction
- multi-depth sampling of cortical ribbon (so multiple gift…
satra updated
6 years ago
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The current distribution comes with meshes in STL format, includes scripts to save meshes as STL format, and includes scripts to display STL format meshes. I would suggest using ANY format other than …
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for the gifti files mapped to fsaverage5, would it be possible to make the values on the medial wall nan ?
satra updated
7 years ago
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* PyNets version: 0.1.0 (2017-08-23)
* Python version: python3.5 (though 2.7 also installed on server)
* Operating System: Ubuntu 16.04.3 LTS
### Description
PyNets was crashing with both exam…
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Hi @muschellij2
Is there a way to read annotation files with this package? There is a function in Matlab called `read_annotation` but can't find its corresponding in R.
Thank you.
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Notebook '03_visualize_embeddings.ipynb' uses a file called
`gradient_data/templates/S900.L.midthickness_MSMAll.32k_fs_LR.surf`
Where does this file come from?
Closest I know of is from a fo…
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Make sure they overlap with the _preproc volume when loaded in Freeview and Connectome Workbench. Use .R.surf.gii suffix/extension.
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I tried running the code as-is, but was getting an error when loading the gii files, the error appears to be thrown by xml_parser from the included GifTI v1.4.
Removing the included version of GifT…