-
Have faculty talk about problems/ideas to solve/work on while at the hackathon or provide general inspiration for people.
## Potential contacts
- Dan Thedans
- Tim Koscik
- Vince Magnotta
- …
-
We should register a new datatype to store the output from this App with the following files.
```
cm.csv (connectivity matrics)
labels.json
```
labels.json will contain data like this
```…
-
I have a vertstats file I'd like to use a "label" set, rather than a continuous statistics set.
Loading it with the regular method doesn't look nice, as the labels cover a wide range and don't map ni…
-
First we have to select what tools to run.
-
Hi Julia,
I have some questions for you about the atlas used in Nighres:
- Which atlas is used by default in the brain segmentation?
- Can we use our own atlas for brain tissue labeling, and …
-
Hi, I love this toolbox so far - especially the speed and flexibility! I've noticed that MDT tends to down-weight CSF voxels in the ODI images. In general, this is fine, but I'm working with older a…
-
The pull request #150 by @Shotgunosine aimed at adding a comprehensive Monkey atlas label set to BrainBox. It has >300 labels for different regions of the brain. Unfortunately, BrainBox can only handl…
-
### Currently supported
- [x] Allow the user to change the atlas used in brain extraction (as long as the selected atlas has a binary brain mask, although it would be better to use only templates t…
-
The command sct_label_vertabrae of SCT version 4.0.0-beta.1 failed to find C2-C3 in a T1w image. In contrast, for the same subject, the SCT version 3.2.7 identified automatically C2-C3.
In attachme…
-
Thanks for the parcellations, great work!
What files exactly are these?
```
CortexSubcortex_ColeAnticevic_NetPartition_wSubcorGSR_netassignments_LR.dlabel.nii
CortexSubcortex_ColeAnticevic_Net…