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ttslr updated
6 years ago
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I read the CENTIPEDE manuscript. I think the author scanned all putative TFBS across the genome.
However, in your tutorial, you suggested using FIMO only to obtain TFBS in peak regions.
Is it pr…
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From Jason:
Is the tool very specific for only the NCBI DB format?
Problem: is organism reliably identified in the headers of proteins?
Retool for Uniprot protein headers? These seem to always con…
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pombe fxn1 is picking up a mapping to cellular iron ion homeostasis KW-0409
I think to the best of current knowledge this protein is involved in iron-sulfur cluster assembly, it doesn't regulate th…
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**Debugging checklist**
[x] Have you updated to latest MFA version? yes, 2.2.4
[x] Have you tried rerunning the command with the `--clean` flag? yes
**Describe the issue**
When running a va…
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Hi there,
I am currently trying to train BPNet on some human ChIP-seq data we have for an RNA Pol III transcription factor. We have multiple cell lines that I would like to use as tasks for the mod…
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Based on the common use of terms like:
- cell type
- cell state
- cell stage
- subtypes
- terminally differentiated cell
- multipotent, totipotent cell,
- undifferentiated cell
- transdif…
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Hello,
I am trying to run decoupleR but have just encountered an error after updating to the most recent version today when using run_ulm or run_mlm:
```R
sample_acts
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Hello,
I am working on TBI in killifish using bioinformatics approach.
I want to investigate killifish clusters and it’s subclusters as it is not very well studied. I want to discover the cell typ…
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Hi Professor, Here is the draft for the proposal/synthesis. It's also in the repository under the same name, "proposal.doc" or "proposal.rmd".
Proposal
Although the analysis of Spanish varieties …