slowkow CENTIPEDE.tutorial issues - Githubissues

slowkow / CENTIPEDE.tutorial

:bug: How to use CENTIPEDE to determine if a transcription factor is bound.

https://slowkow.github.io/CENTIPEDE.tutorial

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error if needed with Mca and categorical variables

#18 FedericaPhd closed 1 year ago
1
Adapting FIMO file to the correct format for centipede_data

#17 Rosmaninho opened 3 years ago
0
Meaning of "score" column in the output

#16 rdbcasillas closed 4 years ago
1
Error in quantile.default(x, c(TrimP, 1 - TrimP))

#15 hugch2020 opened 5 years ago
3
Conservation analysis (site_cons) fails

#14 KrRi4 closed 5 years ago
1
gunzip -c chr*.fa.masked > hg19.fa

#13 zhenzuo2 opened 5 years ago
5
About FIMO finding putative TFBS in the tutorial.

#12 alexyfyf opened 5 years ago
3
Cut-site matrix generation

#11 gouthamatla closed 5 years ago
0
object 'sequence.name' not found

#10 amirshams84 closed 5 years ago
7
Center the input matrix around the motif

#9 danrlu closed 6 years ago
4
Error in if (sum(idx) == 0) { : missing value where TRUE/FALSE needed

#8 zhuangfjnu opened 6 years ago
7
Error at FIMO --parse-genomic-coord

#7 rbronste closed 7 years ago
0
Issue #4

#6 alexg9010 closed 8 years ago
1
fix issue #4

#5 alexg9010 closed 8 years ago
0
Shifted forward and reverse dip

#4 alexg9010 closed 8 years ago
2
Error at matrix2meme step

#3 sandertan closed 8 years ago
2
centipede fitting error

#2 ahorvath closed 8 years ago
8
MOODS

#1 slowkow closed 8 years ago
0