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Hi,
Debian is switching to Python3.8 and we realised that there are test suite failures. These are reported in a [bug report](https://bugs.debian.org/945346).
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Hey!
I have metagenome data with phylogenetic relation between host samples. To account for compositional data, I converted the relative abundance information to AITCHISON distance using DEICODE.
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Hi,
Thank you for the great package.
What does it mean when all of the tests have a score = 0. That there are essentially no features that differ in abundance, so the function cannot calculate …
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- [x] Qiime2 visualization portions integrated
- [x] Molnetenhancer utilized
- [x] Classical Molecular Networking Supported
- [x] FBMN Supported
- [x] Testing
Test Cases:
[Small Classical](…
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Hi,
could you please suggest me, how can insert axis label as PC1 and PC2 with percent of variance in the below code.
Now It is showing label as Axis1 (20%), Axis2(13%), I want PC1 and PC2 inst…
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Hi John,
I'm unable to add ellipse to a PCOA plot that has both shape and color.
I tried doing the same with the data the you showed in 'Modifying Plots Made with ggordiplot". Here is my workflow:…
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I am attempting to do a PCoA on a dataset with 200 samples. With the whole dataset the command:
```
ordinate(Phyloseq_dataset, method = "PCoA", distance = "bray")
```
returns this error:
`…
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I wanted to apply this software to shotgun metagenome count data. I was wondering if-
a) Is it feasible to apply this software to shotgun metagenome count data?
I have the host tree for downstream…
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- [x] Example data - start with only MGF no feature table
- [x] Installation Instructions
- [x] Example command line execution
- [x] Workflow prototype
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Principal coordinate analysis is essentially a PCA with some transformations that make it suitable for non-metric distances where negative eigen values can be generated. It's often used in ecology for…