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biocore
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DEICODE
Robust Aitchison PCA from sparse count data
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For current version of Qiime2, fix bugs or highlight deprecation
#67
colinbrislawn
opened
4 months ago
1
(1/1) Invalid value for '--i-table': 'kelp-biom.qza' is not a QIIME 2 Artifact (.qza)
#66
scleractinia
closed
6 months ago
1
segmentation fault
#65
nvpatin
opened
1 year ago
12
Update readme with update for future of package
#64
cameronmartino
closed
2 years ago
0
update branch
#63
cameronmartino
closed
2 years ago
0
DEICODE Package for R Programming Language
#62
erfanshekarriz
opened
2 years ago
1
converting otu_table.csv format to otu_table.qza
#61
Hesham999666
opened
3 years ago
1
Still having issue with arrow bias in biplot
#60
manasson
opened
4 years ago
1
Produce robust clr matrix as output.
#59
davised
opened
4 years ago
6
add paper citation
#58
gwarmstrong
opened
4 years ago
0
Does DEICODE meet the assumption of same "multivariate spread" among groups for PERMANOVA?
#57
Jigyasa3
opened
4 years ago
1
arrows appear to be biased?
#56
scher-lab
closed
4 years ago
4
autorpca returns a column full of zeros
#55
mortonjt
closed
4 years ago
2
bug fixes in ordering and fraction total variance explained
#54
cameronmartino
closed
4 years ago
5
fraction variance explained.
#53
cameronmartino
closed
4 years ago
1
"variation of interest" seems to be split across axis 2 instead of axis 1, as expected?
#52
fedarko
closed
4 years ago
4
collapse the deicode distance matrix back into feature tables before rpca function?
#51
Jigyasa3
opened
4 years ago
1
Is there a recommended value for "--min-sample" count and "--min-feature" count?
#50
Jigyasa3
closed
4 years ago
5
Error-k must be between 1 and min(A.shape). What is k?
#49
Jigyasa3
closed
4 years ago
2
pip install and setup.py doesn't install DEICODE on computing cluster
#48
Jigyasa3
closed
4 years ago
4
Applying it on shot-gun metagenome data without microbial phylogeny info
#47
Jigyasa3
closed
4 years ago
10
How to use OptSpace function in Python? No fit_transform method
#46
jolespin
opened
4 years ago
6
Add frequency filter.
#45
cameronmartino
closed
4 years ago
1
changing matplotlib backend
#44
mortonjt
closed
4 years ago
3
Typo in tutorial
#43
mortonjt
closed
4 years ago
0
Add version check in command line
#42
cameronmartino
opened
5 years ago
1
Make docs consistent re: default/min parameters
#41
fedarko
opened
5 years ago
2
Update the tutorial output with the changes made in PR #36 & #38.
#40
cameronmartino
closed
5 years ago
1
Add emperor mchelper with CF data
#39
cameronmartino
opened
5 years ago
0
Fixes the centering issue
#38
mortonjt
closed
5 years ago
8
The centering issue remains
#37
mortonjt
closed
5 years ago
3
Adding tests, documentation, arrow scaling issue
#36
cameronmartino
closed
5 years ago
4
Fix a docstring in the Q2 test code
#35
fedarko
closed
5 years ago
0
Sorting eigenvalues and accompanying tests
#34
cameronmartino
closed
5 years ago
3
fix eigenvalues order issue
#33
cameronmartino
closed
5 years ago
1
proportion explained / eigenvalues are swapped
#32
mortonjt
closed
5 years ago
2
update matrix handling to scipy 2-D sparse
#31
cameronmartino
opened
5 years ago
0
Maximum recursion depth exceeded
#30
justinshaffer
closed
5 years ago
5
Refactor redundant code between standalone and QIIME 2 RPCA methods
#29
fedarko
closed
5 years ago
18
Duplicated Scripts
#28
cameronmartino
closed
5 years ago
0
Center biplot
#27
cameronmartino
closed
5 years ago
4
Biplot arrows not completely centered
#26
mortonjt
closed
5 years ago
1
Fix broken links
#25
cameronmartino
closed
5 years ago
2
broken image links in tutorial
#24
mestaki
closed
5 years ago
1
Change tutorial dataset to "moving pictures"
#23
cameronmartino
closed
5 years ago
1
QIIME error
#22
cameronmartino
closed
5 years ago
2
Update tutorials and add distance
#21
cameronmartino
closed
5 years ago
2
conda install in qiime2-2018.11
#20
cameronmartino
closed
5 years ago
4
Update readme
#19
cameronmartino
closed
5 years ago
0
Cleanup
#18
cameronmartino
closed
5 years ago
0
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