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The current implementation of `sgkit.genee` only covers one special case of genee. The method does not perform the regularization of genee. In the current implementation, it is expected that regulariz…
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Hi and first of all thank you for your excellent paper/tutorial and documentation on conducting PRS analyses.
I am having an issue replicating one of the results in the [PRSice-2 section of the tut…
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This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc:
http://gmod.827538.n3.nabble.com/propos…
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Like discussed in last night's GA4GH call, I'd like to propose opening up discussion on how to include ethnicity in phenopackets 2.0.
My impression from the discussion was that simple enumeration o…
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BioJava has an OBO parser:
https://github.com/biojava/biojava/blob/biojava-4.1.0/biojava-ontology/src/main/java/org/biojava/nbio/ontology/obo/OboFileParser.java
Is it fit for purpose?
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### Background
#### Feature Branch: https://github.com/ga4gh/data-repository-service-schemas/tree/feature/issue-394-drs-plus-connect-docs-v1
I'm opening this issue based on followup to the April…
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Define SPARQL queries that can be used to answer the information needs described in the use case flash card and the mindmap linked from #57 by relying on the information models defined in the Virtual …
mroos updated
3 months ago
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Users might enter wrong HPO-IDs, because:
- use of a wrong version of HPO , i.e. use classes that do not yet exist in the HPO used by Exomiser
- use of term-IDs that belong to obsoleted terms in HPO,…
drseb updated
7 years ago
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Dear Kosuke,
This might not be the place to post such an issue but I ran out of options....Hope you can help.
I am trying to install RAINBOWR in the cloud to get more CPU and RAM for my GWAS anal…
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Hi Team,
Appreciate if someone can advise me on this issue:
**Previous steps:**
1. SNP and COG association with fixed effects model
**Pyseer having issue:** K-mer association with mixed effec…