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Thanks to the authors for their great work.
I would like to ask about the ncRPI task, how was the 16658 data in the training set and the 4166 data in the test set constructed? I can't match that nu…
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Our group has many custom force fields for individual molecules that have been developed over the years. We would like to use `gmso` to store and use these force fields in our simulations. This result…
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Please provide as much information as you can:
* **Suggested term label:**
cis-acting lncRNA mediated co-transcriptional gene silencing
* **Definition (free text)**
see below
* **Par…
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Hi,
Is it possible to read the charge, sigma and epsilon values of atoms of a molecule (e.g. benzene) from the str file ([toppar_drude_master_protein_2019g.zip](https://github.com/openmm/openmm/fil…
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**Introduction to Evolutionary Computation**
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UK Biobank Pharma Proteomics Project (UKB-PPP) is described in this paper https://www.nature.com/articles/s41586-023-06592-6 . Among the analyses presented there is an association analysis between pr…
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I performed a docking of two proteins with water using its chemical formula 'H2O' [assigned Copies 500], but no water molecules appeared in the output PDB file when viewed with PyMOL. Could there be a…
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- [ ] 1. genes ex. unc-13, gadr-5, par-2 regex ([a-z]{1,4}-\d+) italicized
- [ ] 2. proteins ex. UNC-13, GADR-5, PAR-2 regex ([A-Z]{1,4}-\d+) NOT italicized
- [ ] 3. variations ex. zu405, ox41,…
kyook updated
3 years ago
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Andy Crouse reported an issue where very un-pathway-like things are being returned when querying for `biolink:Pathway`s associated with a disease. See this query: https://arax.ncats.io/?r=41416
It …
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Hi, thanks for the great project. I'm attempting to load the latest Unimod XML file into Postgres using pyteomics and have encountered a few errors that I've attempted to solve along the way. I've doc…