-
In order to ensure the integrity of data, the most widely used technique has traditionally been checksumming.
Although some related proposal is being built under #368 (see the shared doc there), I …
-
# BIDScoin: an easy toolkit to convert your data to BIDS
Marcel Zwiers1, Rutger van Deelen1
1Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands
[…
-
Hi all,
I am a beginner and have several questions about MRIQC. 1) How to run MRIQC using the outputs from another pipeline that didn’t use the MRIQC workflow? 2) Can MRIQC generate qualitative re…
-
See the [anatomical landmarks](https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/01-magnetic-resonance-imaging-data.html#anatomical-landmarks) section here. And from this …
-
try this
```
mri.unit = 'cm';
mri.dim = [2 2 2];
mri.anatomy = ones(2,2,2);
mri.transform = eye(4);
mri.transform(1,4) = -1;
mri.transform(2,4) = -1;
mri.transform(3,4) = -1;
ft_determine…
-
We are trying to run dockerized MRIQC on anat with BIDS like
```
find /data2/MRI/PING/bids/sub-P0009/
/data2/MRI/PING/bids/sub-P0009/
/data2/MRI/PING/bids/sub-P0009/ses-01
/data2/MRI/PING/bids/s…
-
Hi,
I use freesurfer to generate norm.mgz and aseg.mgz and follow your preprocess steps describe in your paper.
1-intensity normalize to [0-1] for norm.mgz
2-crop for norm.mgz and aseg.mgz
3-affin…
-
First of all, thanks a lot for making your research code publicly available. The installation is flawless and running the inference on the provided examples works fine. However, training the models fo…
-
Hi @adalca, I am trying to register mammogram images (2D) using voxelmorph CVPR version.
- Images are resized (512x448), normalized (0 - 1) and affinely aligned.
- Registration (training and testi…
-
This issue is for planning the next round of doc improvements. The goals for this round:
1. a single entry point for new users for a "getting started" or "60 minute blitz" tutorial or sequence of …