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I noticed that we already have a couple of metapackages in Bioconda. My question is, what is their purpose, and how should we version them?
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For packages that got compiled after the GCC upgrade (?), caused by some issue in the base system - not sure what.
This is bad because it means everything that needs to resolve library locations brea…
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When I install package_bx_python_0_7_2 it seems to skip compilation of the c libraries in lib/bx/bbi, and therefore only creates lib bx.bbi.bigwig_test.
This is what I get:
```
>>> from bx.bbi impor…
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Seems to be the same problem as with the IUC version of bx python
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```
1) What operating system are you using?
Ubuntu 14.04 x86_64
2) What error message was displayed?
make: *** [errCatch.o] Error 1
ERROR: compilation failed for package ‘zinba’
* removing ‘/home/s…
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I have configured two bigbed sources. When I have maxWorkers:0 both sources are displayed properly, but otherwise only the first one is displayed. I'm having trouble debugging this, but the features f…
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Observed a case where adding a primary data file/auxiliary data file pair to the file server where both files are bigbed (*.bb) files fails with a "django.db.transaction.TransactionManagementError: Tr…
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At the moment we are only able of reading a Big file and doing basic interval intersections.
The interesting part (at least for the genome browser) is how to make use of the predefined zoom levels (…
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It's currently the only file with `/* @flow weak */`. This is difficult because of https://github.com/facebook/flow/issues/329.
danvk updated
9 years ago
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I have written a new fast medium/diffuse area chip-seq caller in Python. It uses a binning strategy and one of the files it produces contains the island counts:
```
Chromosome Bin Chip1 Chip2 Input1 …
ghost updated
8 years ago