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https://mp.weixin.qq.com/s/vDPc8tsPcEy5b3j-cPLtIQ
ixxmu updated
2 years ago
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Dear all,
I try to set up snakePipes on a newly installed ubuntu 18.04 and ubuntu 20.04. With both Ubuntus, Creating Environmnets halt in the middle of the set up and do not finnish. I paste in the l…
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https://mp.weixin.qq.com/s/OK4c5GMZIUGD0Zt25ZSULQ
ixxmu updated
2 years ago
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Hi all,
I try to run createIndicies, but it fails. Seems like an error in conda environment?
Gratefull for help!
log:
(snakePipes) leif@leif-OptiPlex-9020:~/Desktop$ createIndices -o ~/Documen…
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https://mp.weixin.qq.com/s/nSXm3gDBu9be2vogFnYxbQ
ixxmu updated
2 years ago
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For new term requests, please provide the following information:
## Preferred term label
Pseudo-bulk aggregation of single-cell expression data
## Synonyms
pseudo-bulk RNA-seq
## Textua…
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Aaron,
Thanks for sharing the new version for testing allelic imbalance. I'm starting to try to port over our WASP AI testing to WASP2. I thought I would start from `.merge.bam` files and recount …
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Hi Hoohm,
I am new to sc RNA seq and have a question about the inputs(R1, R2, Antibody tag) of CITE-seq-Count. If I was given GEX, HTO and ADT fastq files, could you point me to the specific files …
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Hi there,
I'm very interested in this method and managed to get the bMIND() method running using some TCGA bulk RNA-seq data and our own predicted cell type proportions based on our scRNA-seq data.…
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https://mp.weixin.qq.com/s/KnEtsdpoaD5yBaVPX9A_JQ
ixxmu updated
2 years ago