-
Hiérarchie ProteoRE et hiérarchie "Galaxy-P tools" (si question passe me voir)
1. ProteoRE
Data Manipulation
ID Converter (Human, Mouse, Rat)
Filter by keywords and/or numerical value
Venn diag…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LTLA/SingleR
Confirm the following by editing eac…
-
These are the datasets. Counts and initial clustering for all except MERFISH are in Dropbox.
- [x] single-cell SMART-seq (Allen)
- [x] single-nucleus SMART-seq (Allen)
- [x] single-cell 10X (Allen)…
-
Hi,
Would you guys mind sharing how to easily obtain the bulk ATAC narrowpeak files used in the PBMC tutorial as reference for enrichment testing (Corces et al. 2016 Nat Genet)?
Thanks,
Joe
-
$ vagrant --debug rsync-auto
INFO global: Vagrant version: 1.7.2
INFO global: Ruby version: 2.0.0
INFO global: RubyGems version: 2.0.14
INFO global: VAGRANT_DETECTED_OS="CYGWIN_NT-6.3"
INFO globa…
-
Hi @cbravo93,
1) Not so much about the library, but about the analysis itself: to give the topics meaning, in the [tutorial](https://rawcdn.githack.com/aertslab/cisTopic/f628c6f60918511ba0fa4a8536…
-
Hi,
In general, what's the scale of the matrix?
```
> range(atac_mat)
[1] 0.0000000 0.9999923
```
I asked the Seurat V3 author because I am using it for label transferring from scRNAseq d…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MarioniLab/MouseGastrulationData
Confirm the foll…
-
Wranglers need to determine guidelines for choosing the organ and organ part, as assignment to a system if needed.
Currently, there are inconsistencies in ingested datasets for organ and organ fiel…
-
Hi Seurat users,
Is there any way of estimating the optimal number of clusters of a dataset in Seurat and fix an according value for the resolution parameter ? The tutorials recommend from 0.6 to 1…