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aertslab
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cisTopic
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
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adding and plotting seurat_clusters in cistopic object
#84
gebdu
opened
1 week ago
0
Missing resource cleanup in runWarpLDAModels
#83
villadswin
closed
7 months ago
0
Error in metadataFeather(path) : Invalid: Not a feather file
#82
bunina-lab
opened
1 year ago
3
sha256sum download failed
#81
Dalhte
opened
1 year ago
1
Loading Multiome data
#80
sylestiel
opened
1 year ago
0
Installation error "Failed to install 'unknown package' from Github: ..."
#79
simozhou
opened
2 years ago
1
Running Cistopic
#78
Sayyam-Shah
closed
2 years ago
1
add cisTopic output to Seurat object?
#77
klgoss
closed
2 years ago
1
Unused argument error while running topicsRcisTarget
#76
debbie28
opened
2 years ago
0
cisTopicObject <- selectModel(cisTopicObject) Error in .Call("rs_createGD") : C symbol name "rs_createGD" not in load table
#75
yuxuanChen777
opened
2 years ago
1
Ununsed Arguement error in cisTopic/TcisTarget
#74
AAA-3
closed
2 years ago
1
How can I run cisTopic in R 4.0
#73
Paul-YPH
closed
2 years ago
2
LDA run with Python and LogLikelihhod
#72
fvalle1
closed
2 years ago
1
tSNE Clustering Thresholds
#71
AAA-3
closed
2 years ago
1
Tutorial Dataset files
#70
AAA-3
closed
2 years ago
1
Installation issue
#69
andrewjkwok
closed
2 years ago
2
input from fragments.tsv.gz?
#68
JBreunig
closed
2 years ago
1
createcisTopicObject and genomic coordinates incompatibility error
#67
simozhou
closed
2 years ago
3
annotateRegions with own dataset
#66
sinkahak
closed
2 years ago
1
possibility to use BAM files from bulk ChIP
#65
abedkurdi
closed
2 years ago
1
installation issue with ubuntu 20.04
#64
vjbaskar
closed
2 years ago
3
Question about createcisTopicObject
#63
kridsadakorn
closed
3 years ago
1
maximal median size of population peaks
#62
robinweide
closed
2 years ago
1
cistopic object to archR
#61
ytang0831
closed
2 years ago
1
Rsubread should be listed as a required package
#60
kridsadakorn
closed
2 years ago
2
The function runModels is missing
#59
kridsadakorn
closed
2 years ago
2
license
#58
abotzki
closed
4 years ago
2
Is aggregation of dataset required for cisTopic
#57
sylestiel
closed
4 years ago
2
Column 4 ['rep..TF_lowConf...length.peaks..'] of item 2 is missing in item 1.
#56
sylestiel
closed
2 years ago
3
Error in metadataFeather(path)
#55
sylestiel
closed
4 years ago
2
How to obtain Signatures for our purposes
#54
sylestiel
closed
4 years ago
0
Integration using Harmony as described in Drosophila eye-antennal disc preprint
#53
liaojinyue
closed
4 years ago
4
subset a list of cells
#52
hejing3283
closed
2 years ago
1
getBigwigFiles functions error
#51
ytang0831
closed
2 years ago
2
The choice of the bed file
#50
ytang0831
closed
4 years ago
5
distinguishing of broken cells from true low depth cells
#49
wangmeijiao
closed
2 years ago
3
how does the cisTopic LDA algorithm treat low-depth cells ?
#48
wangmeijiao
closed
4 years ago
0
A bug when running runWarpLDAModels() with exactly one topic
#47
Van1yu3
closed
4 years ago
5
Installation Trouble from cisTopic/R/RunModels.R
#46
Toseph
closed
2 years ago
2
cellTopicHeatmap - annotations
#45
cmuus
closed
4 years ago
3
Errors when trying to fit models with less than three topic numbers
#44
wkopp
closed
2 years ago
5
Undefined functions
#43
wkopp
closed
4 years ago
2
Trouble with installation
#42
mvinyard
closed
2 years ago
4
Downloading .feather file
#41
jf292
closed
2 years ago
2
Error of the 'runCGSModels' function in cisTopic v0.3.0
#40
Van1yu3
closed
4 years ago
4
How to load multiple 10X runs to cisTopic?
#39
cartal
closed
4 years ago
2
topicsRcisTarget: Error in .column_indexes_feather(x, i)
#38
luzgaral
closed
2 years ago
2
Plotting cluster info signaturesHeatmap
#37
ccruizm
closed
2 years ago
1
Export the topic-signature matrix
#36
arutik
closed
4 years ago
2
error in cisTopic(logLikelihoodByIter)
#35
Sububioinfo
closed
2 years ago
5
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