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@tpietzsch @axtimwalde @igorpisarev
@constantinpape and myself are working on loading n5 from an AWS object store into bdv. We already have running code and once that is more mature I could also s…
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I wanted to download the file filtered_goa_uniprot_all_noiea.gpad.gz
from http://release.geneontology.org/2024-01-17/annotations/index.html
but it is almost empty...
Indeed the (compressed) g…
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**Describe the bug**
The geo_to_hca script encounters an error and does not work when running for this [project](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE137720)
**To Reproduce**
Steps …
Wkt8 updated
10 months ago
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Current ProteomeScout uses PICR tools - no longer active
bj8th updated
4 years ago
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Please read that and implement it in quality-control.py. Basically we should use trim_galore as the main tool for quality control. In this script the input is fastq files and outputs are validated fas…
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@constantinpape @k-dominik
I have a first prototype that could be tested.
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#### Installation instructions
These instructions should work on:
- MacOS
- Linux
As prerequisites pleas…
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test_core2.py in vedo 2024.5.1 fails (with the debian build of vtk 9.1.0)
```
$ python3 test_core2.py
2024-02-19 14:01:08.512 ( 0.520s) [ 7FD21040] vtkXMLParser.cxx:375 ERR| vtkX…
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I had a discussion with @tomburke-rse and @carlosuc3m about plans and general design for the bioimageio java support.
We currently have these main issues on the java side:
- different java based co…
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iBioSim Version 3.0.0
Operating system: Windows 10
Bug reported by: micotner9@gmail.com
Description:
When trying to preform a reaction-based abstraction on my model using the SSA-Direct (Dynamic) s…