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Dear authors of CircMiner,
I would like to thank you for writing this circRNA software package and to make it available to the scientific community under a FOSS license, and congratulations with yo…
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**Describe the bug**
Hello, I am using DCC to identify circRNAs from three samples, but I got a bug:
[DCC-2020-02-25_1123.log](https://github.com/dieterich-lab/DCC/files/4248431/DCC-2020-02-25_1123.…
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Hi,
What are those *remain_R1/2. fastq files? Are they required for downstream analysis?
Additionally, what are the *remain_R1/2. fastq.srt files? I have 3 paired-end replicates, why only one pa…
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We plan to move 'regulation of x production' terms under 'regulation of gene expression'
Current ontology structure:
* GO:0008150 biological_process
** GO:0051239 regulation of multic…
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Hi,
I am running the tool with the suggested commandline for the given example:
`clear_quant -1 mate_1.fastq -2 mate_2.fastq -g hg38.fa -i hg38.hisat_index -j hg38.bowtie_index -G annotation.gtf…
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Hi Simon,
Thanks for making this great open-source software!
Here is one issue I am currently having with analysis of circRNAs:
After merging back-spliced junctions from three different circ…
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I was reading the user guide and I saw that `--tool` is described as "User provided tool name for circRNA prediction" and I was wondering if this was any name the user would like to use to refer to th…
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When running this R code in Rstudio:
Step2.1_Relation_circRNA-miRNA
it showed the error message:
Error in is_character(x) : object 'module_DEmiRNA' not found
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Hi,
Thanks for the great tool.
I run the analysis using your tool but in the results, I do not have the exon number and the related transcript. Is there a way to retrieve which are the exons in…
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I am running CIRIquant without CIRI2 results files, so it is doing the analysis within the pipeline. The first couple of steps seem to work fine, but CIRI2 analysis fails with an error about a missing…