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dieterich-lab
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DCC
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
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DCC Error
#107
Thalamuthu
opened
1 month ago
0
Using DCC on TCGA data
#106
BERICP01
opened
7 months ago
0
DCC gtf annotation file issue
#105
alessio134298
opened
9 months ago
0
duplicate reads in the count matrix with difference expression value?
#104
mathavanpu
opened
1 year ago
4
DCC throws value error?
#103
mathavanpu
opened
1 year ago
7
Writing `tmp_nonduplicates.#####`
#102
BarryDigby
opened
2 years ago
0
Please make sure that the read pairs have been mapped both, combined and on a per mate basis
#101
BirongZhang
closed
2 years ago
3
Low number of circRNA in predicted in mRNA Seq data
#100
m-kouhsar
closed
2 years ago
2
DCC very high amount of FP
#99
BarryDigby
closed
2 years ago
1
Missing LinearCount and CircSkipJunctions files
#98
mumichae
closed
2 years ago
2
The meaning of warning message
#97
m-kouhsar
closed
2 years ago
2
Problem with BAM file
#96
m-kouhsar
closed
2 years ago
2
detect module doesnt work!
#95
semiramisgh
closed
2 years ago
1
ERROR: Required file detect is missing, exiting
#94
semiramisgh
closed
2 years ago
1
Harmless typo in parameter checking code
#93
egaffo
opened
3 years ago
0
Cannot setup in computer
#92
Golden-proteogenomics
opened
3 years ago
0
circFilter.py need more than 8 values to unpack
#91
yemao701
closed
2 years ago
3
slow
#90
yjkedwards
closed
3 years ago
0
Error in DCC running : missing file even after providing the file .
#89
manzaaa
closed
3 years ago
2
Could DCC get f-circRNA ?
#88
gnilihzeux
closed
3 years ago
2
`Start-End` not assigned correctly
#87
gnilihzeux
closed
3 years ago
2
Normalization of read
#86
aashishps
closed
2 years ago
1
Devel
#85
tjakobi
closed
3 years ago
0
MemoryError
#84
ashokpatowary
closed
3 years ago
2
duplicated circRNAs
#83
Eteleeb
closed
2 years ago
9
ERROR in DCC running: chimeric.out.juntcion probably corrupt
#82
fenguita
opened
4 years ago
1
small issues for bowtie2, star index missing GTF ect
#81
xiongxxp
closed
2 years ago
1
Grouping of samples and replicates
#80
EricSHo
closed
2 years ago
1
-Nr option
#79
EricSHo
closed
2 years ago
3
Question about circFilter.py
#78
JunmingH
opened
4 years ago
14
how does -L, --Ln filter works?
#77
gabee-chan
closed
2 years ago
1
ValueError: need more than 2 values to unpack
#76
corner0426
closed
4 years ago
5
read support for oRNA candidates
#75
harperfauni
closed
2 years ago
4
Filtering by read counts
#74
JunmingH
closed
2 years ago
1
filter by non repetitive region
#73
yjm1992312
closed
2 years ago
17
Combine the results
#72
JunmingH
closed
4 years ago
11
output files
#71
Anbupalam
closed
4 years ago
6
linear control primers in circtools primex
#70
daaaaande
closed
4 years ago
0
ValueError: could not convert string to float: chrM
#69
hydraphenix
closed
2 years ago
5
Combining individual circRNA read counts - error
#68
mihinduk
opened
4 years ago
19
Install asking for python3 while using python 2
#67
Psy-Fer
opened
4 years ago
4
IOError: [Errno 2] No such file or directory: CircRNACount
#66
MaxHills
closed
5 years ago
1
IndexError CombineCounts.py
#65
gabee-chan
closed
2 years ago
7
tmp_DCC files didn't get combine to generate 4 output files
#64
sambhav2mishra
opened
5 years ago
4
Fail at 'Filtering by read counts'
#63
LGray95
closed
5 years ago
2
How to download or create the "repeat.gtf"
#62
Scathacheng
closed
5 years ago
2
Question: mRNA counts in LinearCount file
#61
knuppd
closed
5 years ago
1
Do you have SJ.out.tab files in your sample folder
#60
prince26121991
closed
5 years ago
1
No strand info in circRNACounts when using -F filter
#59
egaffo
opened
5 years ago
1
Issue running DCC
#58
cmonger
closed
5 years ago
40
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