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With recent changes towards cell-centered assembly and other restructuring, Newton's method is currently not working/implemented. Needs to be revived.
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@rambaut @msuchard ---
There is a bug preventing us from using antigenicLikelihood with a diffusion model that includes drift. Briefly:
### ~~Conflict between driftModels and cacheBranches=true~~
~…
trvrb updated
11 years ago
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> I found the section fitting diffusion coefficients (in different branches) to the antigenic maps confusing -- if only because strict diffusion (in one or two dimensions) has no advection term and th…
trvrb updated
11 years ago
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> The comparison in Table 1 is crucial, but the model descriptions are very hard to understand until after reading the Methods carefully. The difficulty is because the models are described in technica…
trvrb updated
11 years ago
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This chapter provides an introduction to mechanical vibrations. Terminology is discussed that is used in analyzing the vibratory response of mechanical systems. Mathematical methods are described for …
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> Would not BMDS provide an entire posterior distribution for location of each strain and sera in a 2-d projection? Are authors plotting the posterior mean? What about the confidence region?
trvrb updated
11 years ago