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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/vitessce/vitessceR
Confirm the following by editi…
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I am trying to run doHMRF on the CODEX spleen dataset available in Giotto.
If I run it on a subset of the dataset (I take some adjacent tiles) it works fine, with acceptable runtimes (e.g. ~20 mins f…
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Hi there.
I have been trying to use TrendSceek with the tutorial dataset of SS cortex[ ] on Rstudio (http://spatialgiotto.rc.fas.harvard.edu/giotto.seqfish.html)
I met following errors.
I appreciat…
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To accumulate class probabilities as in
https://github.com/giotto-ai/giotto-deep/blob/2965f49a5653bc51790bc76c66e21f2e5ca3e65d/gdeep/pipeline/pipeline.py#L110
could easily lead to `CUDA out of memor…
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Here:
https://github.com/giotto-ai/giotto-ph/blob/1d0c628fe5e5c5c4f712bbc1fb9ddc3acc347f9d/gph/python/ripser_interface.py#L458-L459
we convert indices to 32-bit ints. In the C++ code, is every …
ulupo updated
2 years ago
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Hello, I ran mini_seqfish.Rmd in your vignettes directory, everything went well before, but when I ran to doHMRF, the error showed that there was a lack of . I would like to ask if you have ever enco…
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### Describe the problem
Hi, I'm trying to get clickable images/buttons using the grid and the grid-item-cards directives but unfortunately I'm not able to get the links to go to the targets. I've tr…
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Hello,
I am having an issue getting the Giotto (v1.0.4) python environment working while running on a linux environment. I have tried using both `installGiottoEnvironment()` and creating the conda en…
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Hi folks, I recently discovered this product and I really like it! Great job!
I’ve integrated successfully using the script downloaded by CDN but I’d prefer to use the NPM module. However, when I i…
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If `self.dataloaders` has length 3 the batch_size parameter is ignored.
See
https://github.com/giotto-ai/giotto-deep/blob/2965f49a5653bc51790bc76c66e21f2e5ca3e65d/gdeep/pipeline/pipeline.py#L179
…