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When testing with a toy example, I received an error related to how `pcst_fast` is called:
```
Traceback (most recent call last):
File "/miniconda3/envs/oi2/bin/OmicsIntegrator", line 8, in
…
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Hi there,
Thank you so much for developing such a wonderful tool for all of us! I was wondering if I might get your opinion on my curve/lineage data to see if I need to tweak some of the initial pa…
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Hello ,when I try to run "Visual sample note book", I came across a question:
when I run the following code:
`A = graph_construct.graph_construct_radius(test_1000, 0.3);
G = visual.graph(A);
vis…
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Hi there,
Thanks for the package.
When I was running `FindClusters(algorithm=4)`, I encountered this Warning. Should I be worried about it? If so, would you mind helping me diagnose this warni…
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Could we change colors for groups from being defined by an array of colors to being a dict mapping from the relevant key/ category to the color? I would find this more intuitive, and much easier to mo…
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**Describe the bug**
When I fed my graph data into the cdlib.algorithms.leiden() method on a 400k node graph with 600k edges, the algorithm operated correctly and identified communities in the graph.…
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Hi, rapids_singlecell raised an error when running rsc.pp.highly_variable_genes. Could you please take a look at it?Below are the error information. Thanks in advance!
Traceback (most recent call l…
SNOL2 updated
3 months ago
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When I run
`adata = STAGATE_pyG.train_STAGATE(adata, device = torch.device('cuda:0' if torch.cuda.is_available() else 'cpu'))`
I got this problem.
I try to change the version of cuda, but it seems …
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From Ronna:
"For each one of the single cell datasets that we have in the workbench - we need a saved analysis that is as close as possible to the published data, that includes the cell type assignme…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [x] (option…