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kstreet13
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slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
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[Question] Is there any way to force a single trajectory/disable splitting?
#253
yashuap
opened
2 days ago
1
confusion about the end of a lineage
#252
Dooozy
opened
1 week ago
1
Slingshot package ------ Error in crossprod(out) : "crossprod" is not BUILTIN function
#251
yolo177
opened
3 weeks ago
1
Error: (converted from warning) useNames = NA is deprecated. Instead, specify either useNames = TRUE or useNames = FALSE.
#250
Ztxfrhhyy
closed
1 month ago
1
Error while plotting the Minimum Distances Between Cell-Type Centroids using Slingshot in r
#249
HappinessEricst
opened
1 month ago
6
Slingshot error
#248
Leoarie-lab
opened
3 months ago
1
pseudotime in two lineage？
#247
handesome
closed
3 months ago
2
Error in graph.adjacency.dense: Adjacency matrix should be symmetric to produce an undirected graph. Invalid value
#246
erzakiev
closed
3 months ago
5
Removing a lineage from a `PseudotimeOrdering` object?
#245
Dazcam
closed
4 months ago
3
Overlapping curve issue - change to code needed?
#244
crist156
opened
4 months ago
3
What does a curve represent biologically?
#243
jjia1
closed
1 month ago
7
How do I extract feature_info in my rds file?
#242
Saumya513
opened
5 months ago
4
Pick one lineage from many for conditiontest
#241
TdzBAS
opened
5 months ago
3
is slingshot using only the variable genes?
#240
TdzBAS
closed
5 months ago
2
Slingshot followed by CellRank
#239
Yanst86
opened
6 months ago
1
`embedCurves` should also map MST into new space
#238
Yunuuuu
closed
5 months ago
1
Pulling and plotting Differential pseudotime data across different conditions/metadata slots
#237
Yanst86
opened
7 months ago
1
how to calclate the POS to compare other algorithm?
#236
handesome
closed
5 months ago
2
how to analyze with 3 different treatments
#235
AndreaYCT
closed
5 months ago
4
slingshot analysis on PCA but visualization on UMAP
#234
TdzBAS
closed
5 months ago
3
Average curve weights and Pseudotime
#233
ayyildizd
closed
5 months ago
1
Error in igraph::shortest_paths(tree, from = l, to = ends, mode = "out", : At core/paths/dijkstra.c:360 : Weight vector must not contain NaN values, Invalid value
#232
abulislam
closed
8 months ago
3
Curves and lineages
#231
Ahmedalaraby20
closed
5 months ago
3
getCurves() Missing values
#230
msclz
closed
5 months ago
8
Is there any way that I could fit the NB-GAM for all the gene in my large dataset?
#229
pariaaliour
closed
7 months ago
1
How Slingshot work on 90000 number of nuclei?
#228
pariaaliour
closed
5 months ago
6
unexpected behaviour when specifying the start cluster
#227
aaronkwong
closed
11 months ago
2
How to use times parameter to inform about real time while not using clusterLabels
#226
rosshandler
closed
7 months ago
2
is it possible to set multiple start clusters in slingshot
#225
hua1991
closed
7 months ago
1
Error in brewer_pal("qual", "Set2")
#224
apal6
closed
11 months ago
2
Predicting cells belonging to two lineages constructed using two subsetted objects
#223
Tommy0398
closed
7 months ago
5
Error in h(simpleError(msg, call))
#222
handesome
closed
11 months ago
2
Warning messages useNames = NA is deprecated when running the slingshot
#221
xuesen07
opened
1 year ago
13
Trajectories behaving strangely using two different approaches
#220
Tommy0398
closed
1 year ago
3
Assign Seurat Colors to Slingshot plot
#219
deepdiver25
closed
11 months ago
3
slingshot plot(reducedDim(sds) error
#218
gebdu
closed
1 year ago
1
Unable to plot lines
#217
SebastianMHJohn
closed
1 year ago
2
Error while running getLineages()
#216
aditisk
closed
1 year ago
4
Increase the number of branching points
#215
astrid12345
closed
1 year ago
2
Plotting MST In UMAP Space
#214
connerlambden
closed
1 year ago
2
Map cells onto existing trajectory?
#213
lucygarner
closed
1 year ago
3
What is the exact meaning of Lineage？
#212
Siteng999
closed
1 year ago
3
Calculating on PCs + Plotting On UMAP
#211
connerlambden
closed
1 year ago
4
Error running slingshot: system is computationally singular
#210
sopenaml
closed
1 year ago
3
How to plot the pseudotime for all lineages together in one UMAP plot?
#209
xx789
closed
1 year ago
3
Running Multiple Times Results In Some Cells Not Plotting
#208
connerlambden
closed
1 year ago
3
the cluster in end.clust is not the end of pseudotime value
#207
shangguandong1996
closed
1 year ago
4
Scale or not to scale the genes by their variance in real datasets
#206
spriyansh
closed
1 year ago
2
Calculating cell weights
#205
jblich870
closed
1 year ago
4
Porting slingshot to Python
#204
jeskowagner
closed
1 year ago
4
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