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kstreet13
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slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
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Porting slingshot to Python
#204
jeskowagner
closed
1 year ago
4
Error with SlingshotDataSet(): as(<dsCMatrix>, "dgCMatrix") is deprecated
#203
jedazard
closed
1 year ago
5
Clustering discrepancy with Slingshot and Seurat
#202
SirKuikka
closed
1 year ago
5
Error plotting the trajectory
#201
emanuelavilla
closed
1 year ago
2
What assay to use after Seurat integration
#200
nickhir
closed
1 year ago
2
pseudotime distribution is uneven when run slingshot on a subset of dimensionality reduction
#199
altairwei
closed
1 year ago
6
one question about psuedo time inference
#198
YichaoOU
closed
1 year ago
1
steps you have to take after slingshot
#197
FADHLyemen
closed
1 year ago
1
Trajectory over condtions not ending in center
#196
DennisFeige
closed
1 year ago
1
Slingshot curves look weird
#195
madhu-coder
closed
1 year ago
2
error when trying to overlay the lineage trajectory on umap
#194
Y-CBob
closed
2 years ago
2
Slingshot pseudotime with CellRank
#193
sneddonucsf
closed
2 years ago
8
trajectory bootstrapping and uncertainty
#192
gdagstn
closed
1 year ago
3
Installing Slingshot with R version 4.0.5
#191
apekshasingh
closed
2 years ago
2
Trajectories with multiple starting clusters
#190
SirKuikka
closed
1 year ago
7
tsne not found in reducedDims(data)
#189
EAC-T
closed
1 year ago
3
Comparing trajectories from two different experiments
#188
Rahul1711arora
closed
2 years ago
2
No dimensionality reduction found.
#187
victorwang123
closed
1 year ago
1
Error with shortest_paths weight vector containing NaN values
#186
No2Ross
closed
2 years ago
9
How to interpret predicted pseudo-time?
#185
LiJiaqi96
closed
2 years ago
4
Error in shortest_paths when trying to run slingshot
#184
YaelEfraim
closed
2 years ago
3
Clarification on specifying unclustered cells
#183
apekshasingh
closed
2 years ago
11
slingshot to understand progression of the disease
#182
FADHLyemen
closed
1 year ago
5
Scaling pseudotime values
#181
pavsol
closed
2 years ago
2
slinghshot::predict
#180
apekshasingh
closed
2 years ago
4
Slingshot for flow and mass cytometry data
#179
france-hub
closed
2 years ago
7
Error: there is no package called ‘DelayedMatrixStats’
#178
HenrikBengtsson
closed
2 years ago
3
end.clus function not working
#177
SyrupBadger
closed
2 years ago
2
Lineages are partially overlapping
#176
cfriedrich01
closed
2 years ago
4
Slingshot() with treatment conditions and variance in cell cluster
#175
DennisFeige
closed
2 years ago
2
One lineage but 2 slingPseudotime
#174
rmathieu25
closed
2 years ago
3
visually wrong trajectory, am I missing something
#173
stemangiola
closed
2 years ago
5
How to find the distance matrix on version 2.0?
#172
wendelljpereira
closed
2 years ago
2
Fit one principle curve or principle_curve() outout as intput to slingshot
#171
DennisFeige
closed
2 years ago
5
Reverse direction of the path without providing clusters
#170
YOU-k
closed
2 years ago
2
Are slingshot pseudotime value comparable across diverging lineages within a trajectory?
#169
Sophia409
closed
2 years ago
2
Slingshot trajectory depends on number of clusters
#168
aaz398
closed
2 years ago
1
PCA inferred one lineages and umap two lineages
#167
FADHLyemen
closed
2 years ago
2
deviated lineage curve
#166
pchiang5
closed
2 years ago
2
Reversed pseudotime inference
#165
tf1993614
closed
2 years ago
4
how to justify lineages inferred by slingshoot?
#164
FADHLyemen
closed
2 years ago
3
Feeding arbitrary coordinates to slingshot
#163
TiamHeydari
closed
2 years ago
2
Error when running slingshot on Rstudio 4.1.0
#162
HousLi
closed
2 years ago
3
Fewer line coordinates than cells
#161
petervangalen
closed
2 years ago
2
Minimum spanning tree - always on two dimension reduction?
#160
lucygarner
closed
2 years ago
1
Smoothed heatmaps question
#159
CodeInTheSkies
closed
2 years ago
1
Plot issue: cant see the cells
#158
christoforos-dimitropoulos
closed
2 years ago
4
slingshot took long time for 86 k cells
#157
FADHLyemen
closed
2 years ago
1
is it possible to choose one cell as the starting point for Slingshot
#156
liuweihanty
closed
2 years ago
4
plotGenePseudotime was removed from current version
#155
FADHLyemen
closed
2 years ago
4
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