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kstreet13
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slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
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slingshot took long time for 86 k cells
#157
FADHLyemen
closed
3 years ago
1
is it possible to choose one cell as the starting point for Slingshot
#156
liuweihanty
closed
3 years ago
4
plotGenePseudotime was removed from current version
#155
FADHLyemen
closed
3 years ago
4
slingshot creates an unreadable colData
#154
stemangiola
closed
2 years ago
8
associationTest vs conditionTest
#153
FADHLyemen
closed
3 years ago
5
Meaning of genes expressed at the extremes of pseudotime
#152
CodeInTheSkies
closed
3 years ago
4
error message using reducedDim
#151
chrismahony
closed
2 years ago
3
how to filter cells before running slingshot?
#150
FADHLyemen
closed
3 years ago
4
dimension reduction for slingshot on cellular differentiation data
#149
liuweihanty
closed
2 years ago
7
incompatible with R.3.6.3
#148
Qiuyu-dot
closed
3 years ago
1
Is it possible to ask Slingshot to ignore certain clusters?
#147
CodeInTheSkies
closed
3 years ago
2
List of changes in version 2.0.0
#146
lucygarner
closed
3 years ago
2
slingshot object structure changed?
#145
liuweihanty
closed
3 years ago
6
Assigning same colour palette to slingshot plots
#144
NGuslund
closed
3 years ago
3
slingshot not robust on UMAP
#143
Tianran1
closed
3 years ago
1
Heatmap x-axis, increasing order of pseudotime?
#142
CodeInTheSkies
closed
3 years ago
5
slingshot installation problems
#141
liuweihanty
closed
3 years ago
3
Cells ordered by Slingshot pseudotime
#140
NGuslund
closed
3 years ago
3
Understanding "slingPseudotime_X", "slingshot.pseudotime.curveX", and "slingshot.cellWeights.curveX"
#139
CodeInTheSkies
closed
3 years ago
2
Drawing one lineage at a time
#138
CodeInTheSkies
closed
3 years ago
3
Are slingshot pseudotime comparable between different datasets
#137
Tianran1
closed
3 years ago
8
Pseudotime density curve plots
#136
CodeInTheSkies
closed
3 years ago
2
How to interpret two close nodes on the same cluster
#135
CodeInTheSkies
closed
3 years ago
1
Difference between lineages and principal curves
#134
CodeInTheSkies
closed
3 years ago
5
slingshot does not return cellWeights values
#133
YuliaInn
closed
3 years ago
9
results sensitivity to number of PCA components used
#132
lixin4306ren
closed
3 years ago
1
Trajectory returns to start cluster
#131
jinyoung5484
closed
3 years ago
1
If start.clus is not defined
#130
jinyoung5484
closed
3 years ago
4
multiple start point
#129
jefferyUstc
closed
3 years ago
2
Slingshot 2.0 changes.. will it break old code scripts?
#128
kmshort
closed
3 years ago
5
convert slingshot output into Geneswitches object
#127
junjunjing
closed
3 years ago
4
'slingReducedDim' and installing 'TrajectoryUtils' for slingshot.
#126
DustinSokolowski
closed
3 years ago
3
a question about cell-lineage assignment
#125
liuweihanty
closed
3 years ago
2
legend for plots
#124
AidenSb
closed
3 years ago
2
Fixed ordering issue in slingCurves
#123
HectorRDB
closed
3 years ago
0
Optimal number of clusters
#122
danielasenraoka
closed
3 years ago
3
end.clus constraint not satisfied
#121
george-hall-ucl
closed
3 years ago
4
Using fitgam for multiple conditions
#120
jd10020
closed
3 years ago
5
How to analyze pseudotime according to Seurat results
#119
yanglq-bio
closed
3 years ago
6
Pseudotime doesn't follow lineage
#118
GeroKn
closed
3 years ago
4
Error in W[ridx, ] <- W0 : NAs are not allowed in subscripted assignments
#117
akhst7
closed
3 years ago
2
Implementation for ggplot2
#116
tkapello
closed
3 years ago
5
Lineages vs. Curves
#115
balthasar0810
closed
3 years ago
2
Subsetting slingshot object
#114
balthasar0810
closed
3 years ago
2
trajectory not following "lineages"
#113
ccshao
closed
3 years ago
2
Warning in if (class(X) == "dist")
#112
vravik
closed
3 years ago
1
Lineage plots connecting between all cells?
#111
scideas
closed
3 years ago
0
Resolution of umap for slingshot
#110
woodylxf
closed
3 years ago
10
Smooth curves do not seem to fit all cells
#109
tkapello
closed
3 years ago
4
Visualize differential expressed genes in trajectroies
#108
woodylxf
closed
3 years ago
2
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