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Accession: GO:xxxxxx
Name: reservosome
Ontology: cellular_component
Definition: Reservosome is a large membrane-bound endocytic organelle present only in members of the Schizotrypanum subgenus of t…
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i.e. like the mmtbx.xtriage analysis, but for non-macromolecules.
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In order to get full reasoning based on the Rhea reaction participants, we will need to import the ChEBI identifiers for chemicals that are currently missing from the ChEBI import. A way to do this th…
ukemi updated
5 years ago
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after discussion with @thomaspd this is the way to go
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Accession GO:1990531
NameLem3p-Dnf1p complex
def: A protein complex that functions as a phospholipid-translocating P-Type ATPase.
Source: PMID:15090616,
GOC:dph, GOC:rb
This definition does n…
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I ran a short test run with the high-res coupled model on Edison today and encountered a strange IO error:
```
0013: ADIOI_CRAY_READCONTIG(288): filename='/project/projectdirs/acme/inputdata/atm/cam/…
golaz updated
6 years ago
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I've been noticing in some cases the other threshold is a bit high even if I set it to 0.01. I tried to check if the data had some null values, but no!
**Used data:**
[{"name":"Saudi Medic…
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Would it be possible to get a Jupyter notebook (& the environment it was set up in), to calculate charge and second virial coefficient over salt & pH space? Similar to Figure 2 & 3 in your Faraday Dis…
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1 - What do you mean by "metabolites" when you say macromolecules supported?
2 - Organism GenBank annotation, format = genbank, .gb,.gbff (any format supported by BioPython) -> you'll probably run in…
yseif updated
6 years ago
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The heuristics for detecting biomass reaction could be a bit more flexible.
A few suggestions:
- more options for name testing ("biomass", "growth", etc)
- combination of objective coefficien…