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hi, everybody,
I have a problem when " brew install biobakery/biobakery/humann2"
looks like the 'python2' can NOT find the python.h
the system is CentOS 6.5
I have searched
https://github…
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## Metaphlan2
```
$ brew install metaphlan2
==> Installing metaphlan2 from biobakery/biobakery
==> Downloading http://huttenhower.sph.harvard.edu/metaphlan2_downloads/metaphlan2-2.6.0.tar.gz
##…
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```sh
$ brew install maaslin
==> Installing maaslin from biobakery/biobakery
==> Downloading https://bitbucket.org/biobakery/maaslin/downloads/Maaslin_0.0.5.tar.gz
Already downloaded: /Users/kev/L…
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RHEL6/CentOS6 /w linuxbrew. I have tried the `lapack-devel` system package (which provides `/usr/lib64/liblapack.so.3`) as well as `brew install lapack` (which provides `~/.linuxbrew/Cellar/lapack/3.8…
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Hei,
to install metaphlan2, I was using the command
$ brew tap biobakery/biobakery
followed by
$ brew install metaphlan2
everything seems to work correctly; but at the end , I get the follow…
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After successfully installing all dependencies, I get the following when trying to install strainphlan itself:
==> Installing biobakery/biobakery/strainphlan
Warning: Use bowtie2 instead of deprec…
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I've been banging my head against this error for a while:
```
==> Installing lefse from biobakery/biobakery
==> Downloading https://bitbucket.org/nsegata/lefse/get/e3cabe93a0d1.tar.gz
Already do…
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Hello!
I was trying to find R packages to use LEFSE on a phyloseq object and you seem to have the answer!
However, when I try to run it I get the following error. I am using R studio on windows.
…
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**[Original report](https://bitbucket.org/biobakery/metaphlan2/issue/5) by NielQC (Bitbucket: [NielQC](https://bitbucket.org/NielQC), GitHub: [NielQC](https://github.com/NielQC)).**
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Many (edit: 5. workflows.rb, panphlan.rb, shortbred.rb, strainphlan.rb, metaphlan2.rb) formula in this repository have dependencies from homebrew/science. However, as-of Jan 1 that is no longer availa…