issues
search
biobakery
/
MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
http://segatalab.cibio.unitn.it/tools/metaphlan/index.html
MIT License
292
stars
84
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
FIX: metaphlan4 bowtie2-build --threads flag bug
#229
heloint
opened
4 weeks ago
0
Fix IndexError in `set_vsc_parameters()` due to misplaced right parenthesis in string's format method.
#228
ProsperP
opened
1 month ago
0
Fix a bug in the `set_vsc_parameters` function caused the program to terminate improperly when VSG fasta is missing
#227
ProsperP
closed
1 month ago
0
Fix typo
#226
bernt-matthias
opened
1 month ago
0
Add helpful error messages to read_fastx.py
#225
Pandapip1
closed
3 months ago
3
[BUG]:Mamba installation - transaction Error
#224
WUD2018
closed
5 months ago
1
failed to download Chocophlan Database
#223
rishidash12
closed
6 months ago
1
[BUG]Could not locate a Bowtie index corresponding to basename
#222
rwrwei
closed
6 months ago
1
Actinomyces Viscosus
#221
lear-711
closed
8 months ago
1
[BUG] Internet and permission issues when connecting to metaphlan online database through proxy server
#220
LMM716
closed
9 months ago
1
FileNotFoundError: [Errno 2] No such file or directory: Database__SGB2GTDB.tsv'[BUG]
#219
dywang0323
closed
10 months ago
1
Merge_metaphlan_table.py Error
#218
nelli-vardazaryan
closed
11 months ago
1
Correspondence between SGBs and specific strain names
#217
fanqiedantang
closed
11 months ago
1
Revamp issue creation options
#216
Pandapip1
closed
5 months ago
7
NOT getting to run it
#215
sekhwal
closed
1 year ago
1
[BUG] mpa_vJan21_CHOCOPhlAnSGB_202103 cannot used
#214
AlsoATraveler
closed
1 year ago
1
[BUG]ValueError: Number of passed names did not match number of header fields in the file A clear and concise description of what the bug is.
#213
Damianyangyang
closed
1 year ago
1
reduce update frequency during download
#212
kdm9
opened
1 year ago
0
FileNotFoundError: [Errno 2] Metaphlan4_Data_SGB2GTDB.tsv
#211
JustinGibbons
closed
1 year ago
1
[BUG] MetaPhlAn ignores database.
#210
maxvonhippel
closed
1 year ago
3
Help with customising the database
#209
vinisalazar
closed
1 year ago
1
empty output
#208
javad30
closed
1 year ago
1
#Question
#207
JiaZhong28
closed
1 year ago
1
Fix typo in merge_metaphlan_tables.py
#206
fplazaonate
opened
1 year ago
0
nreads of bowtie2 file
#205
songdq
closed
1 year ago
3
A strange result
#204
TKsh6
closed
1 year ago
1
[Request] Tutorial on generating a custom database for MetaPhlAn 4 from scratch (not updating the existing database)
#203
jolespin
closed
1 year ago
5
bowtie2-align exited with value 137
#202
SMetagenomics
closed
1 year ago
1
How to get mpa_vOct22_CHOCOPhlAnSGB_202212.nwk for calculate_diversity.r?
#201
pangkun97
closed
1 year ago
1
UnicodeDecodeError
#200
TKsh6
closed
1 year ago
1
Solving environment failed
#199
sasakitomiyano
closed
1 year ago
1
[BUG]
#198
kullrich
closed
1 year ago
1
[BUG] MetaPhlAn 4.0.4 h5py/numpy version issue
#197
sjaenick
closed
1 year ago
1
[BUG] bowtie database not found
#196
bernt-matthias
closed
1 year ago
1
I keep getting "MD5 checksums do not correspond!...." error
#195
aclydlgc
closed
1 year ago
1
-t rel_ab_w_read_stats output error
#194
MatteoBuffoni
closed
1 year ago
1
Sample2markers speedup
#193
PuncocharM
closed
1 year ago
0
Unable to use --install[BUG]
#192
wasade
closed
1 year ago
1
[BUG] Running MetaPhlAn from SAM input fails to the type of the variable "n_metagenome_reads"
#191
alexhbnr
closed
1 year ago
1
No MetaPhlAn BowTie2 database found
#190
figbeirns
closed
1 year ago
1
[BUG] mpa_vJan21_CHOCOPhlAnSGB_202103_species.txt.bz2 is not complete
#189
aghozlane
closed
1 year ago
1
[BUG] Metaphlan wiki typo
#188
hazmup
closed
2 years ago
1
[BUG]
#187
Yvain-Desplat
closed
2 years ago
1
How to Install metaphlan4?
#186
yhg926
closed
2 years ago
1
List of taxa in Metaphlan4 database
#185
nick-youngblut
closed
2 years ago
1
Fix `UnboundLocalError: local variable 'idx' referenced before assignment` for single read input files
#184
pkonieczny
closed
2 years ago
0
[BUG] metaphlan 4 beta KeyError: 't'
#183
ilyavs
closed
2 years ago
1
Dropbox files no longer exist: cannot install database
#182
dkoslicki
closed
2 years ago
1
MetaPhlAn3: IndexError: list index out of range
#181
y1025i
closed
2 years ago
1
Integration of vsc code in new MP-repo
#180
azufre451
closed
2 years ago
0
Next