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Proposal for a new kops cobra command
```
kops audit
```
Which would essentially allow us to run some sort of validation against some resource. Use cases I can think of
### 1. `kops audit a…
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hi ,i am beginner in programing field and i want to load Cb models in MATLAB , for example i downloaded the XML model from BIGG and load it in MATLAB , after loading when i optimize my cell model , al…
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Hello all,
CobraToolBox's model structure carries redundant information in its structure. Occasionally, this causes problems when it comes to model maintenance and coherence between different represe…
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SELECT 33, bq.id, 'Legal'
FROM (
SELECT
`u`.`id`, `u`.`layout`,
`u`.`id` AS face_id,
CASE
WHEN layout = 'double-faced' OR layout = 'fli…
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The original GIMME article (http://dx.plos.org/10.1371/journal.pcbi.1000082) uses a weighted penalty when re-enabling flux in reactions that do not have genes expressed.
The penalty is weighted by exp…
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> Begin forwarded message:
>=20
> From: Sarah Keating
> Subject: [sbml-discuss] Release of libSBML-5.13.0
> Date: April 14, 2016 at 3:00:00 AM MDT
> To: LibSBML Development List , =
SBML Discussion…
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Hi there,
I was using the cobra Toolbox with cplex_direct as a solver, and I ran across an annoying warning on a Win 8.1 Machine:
```
Warning: File 'clone1.log' not found.
In solveCobraLP at 867
…
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* Let LazySolution record requested values and make those available even after being invalidated.
* Add `__getitem__` that works just like `get_primar_by_id`.
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Dear Dr. Fleming,
After installing Gurobi, and after initializing Cobra, I run testAll. This gives an error message somewhere half way. I found out that the problem is with testModels. I have noticed…
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I've been looking at detectDeadEnds, and when setting removeExternalMets to 1, the behavior seems to be buggy.
All examples are from human RECON 2 website.
Right now, setting it to true would remove a…