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Hi all,
Thanks for this great tool! I have a question on its use though.
Could the user examine the binding specificity of the motifs in your models by querying a sequence > 900b introducing an up…
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**26 June 2017**
My first deep learning models finished training today! For the first pass, I trained a regression model using the 2.2M fragments that were positive across both of the SuRE replicat…
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SuRE-seq, the previous dataset I was working with, is fundamentally a promoter assay, and therefore it was hard to find many biologically relevant features other than GC content (which affects nucleos…
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We've be using URL references for two purposes:
1) Blog posts, online news articles, etc.
2) Conference papers
In both cases, do we need to add some additional information to the references? Cas…
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Following the [forum thread](https://forum.vuejs.org/t/is-anything-being-done-in-core-vue-to-make-unit-testing-easier/7431/17), using this issue to kick off work on an official unit testing utility li…
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While running the process-all-samples pipeline, STAR alignment completes successfully and creates the symlink as expected. However, the immediate steps thereafter can not recognize the bam file pointi…
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Hi all,
I have a bunch of genome-scale models from [ModelSEED](modelseed.org), and I'd love to take a look at them (they're good on building the model, but the site is still under development for v…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/asrinivasan-oa/gread
Confirm the following by editing e…
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This behavior was originally discovered by @tmargus in Issue #35.
The setup.py script attempts to automatically grab misc and riboutils from the respective repos and install them using "pip3 instal…
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I joined the Matchmaker Exchange group late last year. After reading up the work done by GA4GH, I found the avro schema files confusing.
After several working group calls and many emails, I managed t…