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dieterich-lab
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rp-bp
Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.
MIT License
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[pre-commit.ci] pre-commit autoupdate
#160
pre-commit-ci[bot]
opened
3 months ago
1
Fix CI for 3.9 and 3.10
#159
eboileau
opened
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#158
pre-commit-ci[bot]
closed
3 months ago
2
Extract-ORF-Coordinates Error
#157
bshim181
closed
9 months ago
1
--limitGenomeGenerateRAM error in prepare-rpbp-genome
#156
mjutersek
closed
9 months ago
1
[pre-commit.ci] pre-commit autoupdate
#155
pre-commit-ci[bot]
closed
9 months ago
1
Data munging for the app does not handle de novo ORFs as it should
#154
eboileau
closed
1 year ago
2
[pre-commit.ci] pre-commit autoupdate
#153
pre-commit-ci[bot]
closed
1 year ago
1
ValueError: The periodic offsets file was found, but no periodic lengths were found.
#152
jdcla
closed
1 year ago
2
fix channel order in environment file
#151
lkeegan
closed
1 year ago
1
Apps don't work with docker
#150
eboileau
closed
1 year ago
13
remove docs/requirements.txt, add to [docs] optional dependencies in …
#149
lkeegan
closed
1 year ago
1
update readthedocs config
#148
lkeegan
closed
1 year ago
1
Next release
#147
eboileau
closed
1 year ago
43
Need help with docs
#146
eboileau
closed
1 year ago
12
Auto-fire a browser when a display is connected
#145
dokempf
closed
1 year ago
1
tests/regression/test_rpbp.py::test_pipeline_part2 fails
#144
eboileau
closed
1 year ago
3
Modify installation & models compilation for bioconda
#143
lkeegan
closed
1 year ago
1
IGV (app) GTF track not always visible
#142
eboileau
closed
1 year ago
1
WIP: IGV data loading via Flask app
#141
dokempf
closed
1 year ago
1
parallel processing using shared globals (macOS)
#140
lkeegan
opened
1 year ago
3
Predictions dashboard with test data not working
#139
dokempf
closed
1 year ago
9
Dashboard entrypoints
#138
dokempf
closed
1 year ago
2
IGV does not load...
#137
eboileau
closed
1 year ago
5
How to run the app locally w/o calling the python script?
#136
eboileau
closed
1 year ago
13
setup.py imports rpbp
#135
lkeegan
closed
1 year ago
10
Error in estimate-orf-bayes-factors
#134
eboileau
closed
1 year ago
10
Final sprint
#133
eboileau
closed
1 year ago
1
ORFs gene/biotype and alternative transcript information + IGV genome
#132
eboileau
closed
1 year ago
0
Implement interactive reporting dashboard
#131
eboileau
closed
1 year ago
4
Improve parallelisation
#130
eboileau
closed
1 year ago
1
Upgrade/Installation
#129
eboileau
closed
1 year ago
3
Pystan3 or CmdStanPy?
#128
eboileau
closed
1 year ago
3
Bump joblib from 0.13.2 to 1.2.0
#127
dependabot[bot]
closed
1 year ago
2
macos ci
#126
lkeegan
closed
1 year ago
16
remove F523 error ignoring
#125
piterand
closed
1 year ago
1
Delete unused variables
#124
piterand
closed
1 year ago
9
Changed position of 2 strings of code
#123
piterand
closed
1 year ago
3
Fixed f821 error
#122
piterand
closed
1 year ago
4
use pandas in tests instead of readlines
#121
lkeegan
closed
1 year ago
1
Fixed w605 error
#120
piterand
closed
1 year ago
2
Dev ssciwr
#119
piterand
closed
1 year ago
3
add pytest-depends plugin to conda environment
#118
lkeegan
closed
1 year ago
0
Tests fail on GitHub Actions but succeed locally
#117
eboileau
closed
1 year ago
17
add code coverage to CI
#116
lkeegan
closed
1 year ago
1
add pre-commit config & run pre-commit on all files
#115
lkeegan
closed
1 year ago
0
improve tests
#114
lkeegan
closed
1 year ago
3
add conda environment file and minimal CI
#113
lkeegan
closed
1 year ago
2
Failed to download the example dataset
#112
mt1022
closed
1 year ago
3
find ORFs that do not start with AUG
#111
z626093820
closed
1 year ago
0
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