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---
id: smoldyn
version: "2.67"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/f095b2e1d0e99a6c9c2d92a35782d21960f54a78/biosimulators.json
specificationsPatch:
version: …
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---
id: amici
version: 0.11.18
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_AMICI/405d9655f93d248eed9f32ba1ed0de5b600f1ce2/biosimulators.json
specificationsPatch:
…
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RDF.from_file() does the wrong thing with Reactions when reading from an SBML file. For example, from BioModels #385, for the reaction tagged as metaid_0000042, the system produces annotations as foll…
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---
id: bionetgen
version: 2.6.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_BioNetGen/2af999f8848b26e085f7009c18ca9273fbd2d754/biosimulators.json
specificationsPa…
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---
id: xpp
version: "8.0"
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_XPP/27566f78cc0ff8ae221f1a8feab27c8e84eaa190/biosimulators.json
specificationsPatch:
versi…
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---
id: xpp
version: "8.0"
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_XPP/3095921ed258c2f6951b48f0fb239ce85166d840/biosimulators.json
specificationsPatch:
versi…
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---
id: amici
version: 0.11.18
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_AMICI/b1d60640229628a97d2fc9d444d6870409117abf/biosimulators.json
specificationsPatch:
…
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The RDF.from_file() inappropriately uses the "local:" namespace when reading annotations from SBML files. This can be easily seen with the species annotations from BioModels #385. For example, species…
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---
id: smoldyn
version: "2.67"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/950fa3f59ebccd8f187effda3b34ad5234495d39/biosimulators.json
specificationsPatch:
version: "2.67…
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---
id: pyneuroml
version: 0.5.11
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_pyNeuroML/65a64d0aab2b40e11d218aede041e0e4b0776fe0/biosimulators-pyneuroml.json
speci…