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* fastq_to_bam version: 3.0.4
* Python version: 3.9
* Operating System: linux
### Description
Hello,
I try to install Nucleo in order to create MSK-ACCESS bams.
It is recommended at the in…
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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_021461385.2
…
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It's not necessary to require Dockerfile in CWL we can do:
``` yaml
requirements:
- "@import": envvar-global.cwl
- class: InlineJavascriptRequirement
- class: DockerRequirement
dockerImageI…
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**Describe the bug**
To launch a workflow with WES from the CLI, you need to specify `--entry` (and --json?), but the help message just says `[parameters]`. Compare to workflow launch, where the para…
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I think the user guide could do with re-ordering. I am not sure that a user just starting out would need to know docker before staging input files or array inputs for instance. I also wonder if it w…
longr updated
2 years ago
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**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
`curl -OL https://github.com/ncbi/pgap/raw/prod/scripts/pgap.py`
`./pgap.py --update`
PGAP version 20…
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### Is there an existing issue for this?
- [X] I have searched the [existing issues](https://github.com/flutter/flutter/issues)
- [X] I have read the [guide to filing a bug](https://flutter.dev/do…
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A [bunch](https://ucsc-ci.com/databiosphere/toil/-/jobs/20674) of [recent](https://ucsc-ci.com/databiosphere/toil/-/jobs/20699) CI runs have been producing this lately:
```
______________________ CWL…
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**tl;dr: We need a tutorial/lesson aimed at teaching CWL to complete beginners. Are you interested in helping to make this happen?**
Based on discussions with various people in the CWL user/develop…
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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_022581195.2
…