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It would be useful to have complete genomes in the repository for Selenobot purposes (necessary for extending predicted selenoproteins).
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Hi, Felix.
I am currently utilizing Bismark to analyze DNA methylation data from the Cyprinus carpio species and am encountering issues with very low mapping efficiencies (1.7%). Could you please pro…
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Hello there I am running into an issue while running the human genome on the test file below. After I do the genome prep I see these messages. I verified that the bt2l files exist and when running ls …
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Thanks for conducting this useful tool for 3D genome analysis.
However, when I tried to convert the bam file (haplotagged by whatshap) to the pairs format, I met the error
```bash
pairtools:Empty o…
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The only XDV.1+S:R346T seqs were the N:I292T branch when XDV.1.2 was designated.
However as more seqs are submitted there are many more branches now. Suggest to broaden XDV.1.2 accordingly. @AngieHi…
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Dear Shujun,
We're using LTR_retriever to assess a genome assembly for Chrysanthemum lavandulifolium. Because the genome is very large and a single chromosome's size exceeds 300 MB. I have been ru…
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**Is your feature request related to a problem? Please describe.**
when committing larger datasets it takes forever, git status seems to check every few minutes for changes, takes forever
(git statu…
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Transferred from sars-cov-2-variants/lineage-proposals#2173.
## XEC> G2060A(Orf1a:A599T)> G28378T(Orf9b:R32L)
Query: G2060A, G28378T, -A11983T,-C18687T, -G25234T,-C27944T
("-"s are added to remov…
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This is not something I can repo. It just randomly occur.
Second time:
. I get …