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I _just_ noticed this; this is a problem for prokaryotes. Many prokaryotic mRNAs are not polyadenylated. I don't know why the poly(A) RNA binding term is in the ontology here, anyway - as far as I c…
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Most miRNA can be written with `g(HGNC:YFG) transcribedTo m(HGNC:YFG)` so the inference of the central dogma should also make these edges.
I'm also curious about miRNA's themselves, since there's …
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Hi,
We are using BioPortal’s ontology recommender, linked open vocabularies and aber-owl services to map the ImmPort’s tempaltes to OBI and other relevant ontologies. Based on our observation, most…
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Been through all annotations
NMD
cytoplasmic exosome
ski complex
upf1-3
tif45
NSD
cytoplasmic exosome
ski complex
upf1-3
poleto
General (deadenylation dependent turnover)
CCR…
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I'm trying to get new terms to describe some of the data in the FaceBase resource (this project is funded by NIH/NIDCR, website at facebase.org).
1. Suggested term name: Chromatin modifier-associat…
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In GO RNA processing is defined
Any process involved in the conversion of one or more primary RNA transcripts into one or more ****mature RNA molecules***.
BUT "processing" is also used to des…
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1.
GO:0097320 membrane tubulation
is defined
A modification in a plasma membrane resulting in formation of a tubular invagination.
(check: maybe should this really be "plasma membrane curvature" to f…
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An author describes method described as "mRNA interactome capture" as evidence for annotation to "RNA binding".
This method essentially uses UV crosslinking (in vivo) followed by selection on an oli…
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From
http://amigo.geneontology.org/amigo/reference/PMID:25468996
This is also generating process annotations to
RPL29 60S ribosomal protein L29
"cell-cell adhesion"
GOC Homo sapiens IEA …
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UniProt have sent us a set of new phage KWs and ViralZone terms that they have added in collaboration with Ariane Toussaint. The idea was to cover all main molecular mechanisms and structural elements…