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Hello,
I was considering using Diamond instead of Blastp, is it "ok"? As far as I know the output format is the same as blastp so it should work, right? (and though Diamond is less sensitive than B…
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Hi there,
I'd like to get the developer's (or other users') advise regarding the right way to generate alignment GFF inputs for EVM.
Assuming what I have is three fasta files:
1) Genome sequence
…
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I'm getting the following error in Trinotate v3.1.1:
```
CMD: /gscratch/srlab/programs/Trinotate-v3.1.1/util/rnammer_support/util/superScaffoldGenerator.pl /gscratch/srlab/sam/data/C_bairdi/transc…
kubu4 updated
3 years ago
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Hi there!
I am working on the annotation of a new species.
As starting data, I have de novo and genome guided assembled transcripts and PacBio reads produced from another strain of the same spec…
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Installed in galaxyproject/usegalaxy-tools#448
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Can you please help me understand something about the tutorial? I'm reading here:
https://mikado.readthedocs.io/en/latest/Tutorial/
and I see at the mikado serialize step there is a command whic…
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**Are you using the latest release?**
v1.8.4 , all dependencies met except GeneMark
**Describe the bug**
During the predict step funannotate all is well until snap & glimmerhmm step. Both trainin…
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Hi David,
Thank you for maintaining this awesome tool (and having written it in the first place).
I have a couple of transcriptomes that were assembled _de novo_ with `Trinity` (plus `TransDecod…
vragh updated
3 years ago
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Hello funannotate users,
I am currently using funanotate v1.8.4, installed through docker, and funannotate check and testing works without issues.
I am trying to run funannotate predict on some …
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**Are you using the latest release?**
funannotate v1.8.4 # singularity image
**Describe the bug**
my long read evidence does not seem to be mapped to the reference properly
**What command did…