nextgenusfs funannotate issues

nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline

http://funannotate.readthedocs.io

BSD 2-Clause "Simplified" License

299 stars 82 forks source link

issues

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Parsing uniprot blast hits

#1052 SnuniKVC opened 8 hours ago
0
annotations.antismash.txt file empty using Antismash 7.1 online

#1051 GabrieleRigano99 closed 4 hours ago
1
linux/arm64 docker image

#1050 JLSteenwyk opened 3 days ago
2
Iprscan and annotate do not recognize predicted output folder

#1049 Okompath opened 1 week ago
0
genemark probuild takes too long

#1048 sqwwww opened 2 weeks ago
0
funannotate test failing at predict step

#1047 pwkooij opened 2 weeks ago
6
question about the busco version in funannotate

#1046 dingxm opened 2 weeks ago
0
funannotate predict works on test data but not on my real data

#1045 Faheema-khan closed 3 weeks ago
0
How to fix a local variable in gff3

#1044 yumi-nakadera opened 1 month ago
0
funannotate remote does not recognise predict_results folder

#1043 ydanylko opened 1 month ago
7
Evidence modeler has failed, exiting

#1042 genbuf opened 1 month ago
1
When running funannotate compare, comparison of 2 species succeeds but comparison of 3 species fails

#1041 liuyca1 opened 1 month ago
0
Funannotate compare

#1040 danielabermeo8 opened 1 month ago
1
CMD ERROR: diamond makedb --in /tmp/augustus.training.proteins.fa --db /tmp/aug_training.dmnd

#1039 dingcaojin opened 1 month ago
1
Updated database versions for MIBiG and dbCAN

#1038 IanDMedeiros opened 1 month ago
0
Run InterProScan with funannotate-docker

#1037 hanhan124 opened 1 month ago
0
isoforms in gff3

#1036 Nitin123-4 opened 1 month ago
1
How to run funannotate setup local，configure Funannotate to use the locally downloaded database files instead of re-downloading them?

#1035 zengqd opened 1 month ago
0
How to check the full-length genes from the final annotation.

#1034 Nitin123-4 opened 2 months ago
0
funannotate update ERROR

#1033 ChuanzhengWei opened 2 months ago
0
Annotate command drops AttributeError: 'SimpleLocation' object has no attribute 'nofuzzy_start' error

#1032 UmerFarooq17 opened 2 months ago
3
TypeError: '>' not supported between instances of 'NoneType' and 'int'

#1031 ad010902 opened 2 months ago
2
How can I include the contig from the mitochondrial genome?

#1030 Antonio-Sanpedro opened 2 months ago
0
GENMARK

#1029 ad010902 opened 2 months ago
2
Database is not properly configured, re-run funannotate setup, busco_seed_species

#1028 ad010902 opened 2 months ago
1
Funannotate sort (Version 1.8.17): error while sorting assembly/contigs

#1027 jmartinsjrbr opened 2 months ago
0
EC_number, eggnog and COG terms not in annotate_results/annotations.txt

#1026 slsy9965 opened 2 months ago
1
funannotate update, kallisto error

#1025 schraderL opened 2 months ago
1
Signalp v4.1 Installation

#1024 mojiefei opened 2 months ago
0
Update funannotate-p2g.py for contig_expand to use int

#1023 photocyte opened 2 months ago
0
Predicting genes for fungal metagenome assembly sequences

#1022 mojiefei opened 2 months ago
0
How to solve the issule about "Found 1 bad contigs, where alphabet is less than 4 [this should not happen]"

#1021 weiguanyue opened 2 months ago
0
diamond Once the parameter, subject-cover and query-cover is used, an error segment (core dumped) is reported.

#1020 zhixia-song closed 2 months ago
1
Protein FASTA file not found, exiting - annotate_misc genome.protein.fa has no data

#1019 stachyris closed 4 weeks ago
2
ERROR: gmes_petap.pl not installed ERROR: signalp not installed when they are

#1018 joana-morais opened 2 months ago
1
ERROR: gmes_petap.pl not installed

#1017 mojiefei closed 2 months ago
6
KeyError: 'FUN_000001' in funannotate annotate

#1016 bpeacock44 closed 2 months ago
9
iprscan.xml related erro

#1015 Panda-smile closed 3 months ago
2
GFF FORMAT

#1014 Panda-smile closed 3 months ago
3
Question: Dependency list is different for install versus documentation

#1013 benyoung93 opened 3 months ago
2
--busco_db and --busco_seed_species with RNA-seq

#1012 enriquepola1996 opened 3 months ago
0
database error and error during funannotate compare

#1011 devinmumey closed 3 months ago
3
2x Expected Gene Count

#1010 jasongallant opened 3 months ago
10
When to use --busco_seed_species vs --augustus_species

#1009 mperisin-lallemand opened 3 months ago
0
funannotate annotate --output folder empty

#1008 YuLanSky opened 3 months ago
0
Traninglimmerhmm wrong fasta file: Error 21

#1007 adrianestrada1405 opened 3 months ago
0
Samtools sort failing in funannotate train because of multi-part indexing by minimap2

#1006 monkfromouterspace opened 3 months ago
4
funannotate test -t annotate Error 'SimpleLocation' object has no attribute 'nofuzzy_start'

#1005 ewmorr closed 3 months ago
6
KeyError: 'AUGUSTUS_CONFIG_PATH' in funannotate setup

#1004 joana-morais closed 4 months ago
0
EVM hangs on last partition.

#1003 caonetto closed 3 months ago
1