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nextgenusfs
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funannotate
Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
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Issue parsing iprscan XML file
#1002
Cat4Lion
opened
4 months ago
3
Empty functional annotation after funannotate functional
#1001
pcampiteli
opened
4 months ago
3
"from Bio.SeqUtils import GC" fails as of Biopython 1.82
#1000
peterjc
closed
4 months ago
10
CMD Error in funannotatate train at PASA step with specific samples.
#999
LucasvdGouw
opened
4 months ago
2
funannotate update with mysql
#998
Nitin123-4
opened
5 months ago
6
RE: annotate is not adding GO terms to the gbk file
#997
Malabady
opened
5 months ago
1
funannotate predict doesn't recognize soft mask assembly
#996
MoritzKaufmann
opened
5 months ago
6
Phobius run is stalling halfway through process
#995
dkumarsh
opened
5 months ago
1
CMD ERROR during update using fun annotate-docker
#994
bpeacock44
closed
3 months ago
15
test -t predict failed at augustus
#993
ZeweiSong
closed
5 months ago
2
Failing tests (annotate being the most important one)
#992
HerderB
opened
6 months ago
4
RE: options for funannotate predict
#991
Malabady
closed
6 months ago
0
/venv/lib/python3.8/site-packages/funannotate/aux_scripts/filterIntronsFindStrand.pl FASTA parsing failure in Docker 1.8.16
#990
MichaelFokinNZ
closed
5 months ago
4
No GBK file produced in update step
#989
tania-k
opened
6 months ago
3
Issue in Funannotate sort
#988
dkumarsh
closed
4 months ago
4
Interproscan creates empty iprscan.xml file
#987
UmerFarooq17
opened
6 months ago
1
TanTan with a repeatModeler consensus library
#986
Malabady
closed
4 months ago
3
Identical CDS features and Splice Variant Locus Tag Assignment Question
#985
StephenHarding-USDA
closed
7 months ago
2
Can we set up a point about pasa on update stage?
#984
sunnycqcn
closed
4 months ago
7
UnboundLocalError: local variable 'values1' referenced before assignment
#983
bgruening
opened
7 months ago
1
Stringtie in fun-predict
#982
DiegoSafian
opened
7 months ago
1
Install funannotate docker image
#981
theokirkland
opened
7 months ago
1
Filter gene models based on an AED cutoff during or after update step?
#980
nam-hoang
closed
7 months ago
4
Can the RNA fasta files from NCBI's Refseq be provided to the "funannotate predict --transcript_evidence" parameter?
#979
maruiqi0710
opened
7 months ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'rna-seq.nanopore.fastq.gz
#978
arayyyy310
opened
7 months ago
2
NameError: name 'log' is not defined
#977
sophie-03
closed
7 months ago
16
Funannotate predict stuck at Augustus step
#976
krostifangers
closed
4 months ago
2
make mask log file unique
#975
hyphaltip
closed
8 months ago
0
Submission of two parts sqn files
#974
hassantarabai
closed
8 months ago
3
augustus: ERROR PP::Profile: Error parsing pattern file"/usr/local/venvs/funannotate/lib/python3.9/site-packages/funannotate/config/EOG092C0B3U.prfl", line 8.
#973
dgslos
closed
8 months ago
4
Code fix: wrong path for evidence_modeler.pl in funannotate-runEVM.py
#972
Bio-finder
closed
8 months ago
4
Funannotate setup database fails
#971
dgslos
closed
8 months ago
1
Funannotate check does not recognize samtools
#970
dgslos
opened
8 months ago
1
Command to generate snap-predictions.gff3?
#969
nam-hoang
closed
8 months ago
3
Funannotate annotate - issue with Interproscan and tbl2asn
#968
Laura-CE-Campbell
closed
8 months ago
8
Can GeneMark be run somewhere else and provided as --other_gff to funannotate in Docker?
#967
MichaelFokinNZ
closed
8 months ago
0
Incorporate rRNA results and Circos Plot
#966
zuber-bioinfo
opened
9 months ago
1
funannotate clean takes a lot of time
#965
Nitin123-4
opened
9 months ago
2
Final GFF is listing human gene names with random underscores at the end
#964
jdee3
opened
9 months ago
5
>10% of genes have RNA-Gene location discrepancies in DiscRep
#963
Nicholas-Kron
opened
9 months ago
6
Funannotate update: Feature overlapped by 2 identical-length genes but has no cross-reference
#962
metalichen
opened
9 months ago
1
Properly formatted 'funannotate predict' files do no exist in this directory
#961
aldendirks
opened
9 months ago
3
Funannotate Predict Freezing
#960
ChuChuChaddy
opened
9 months ago
0
Error parsing XML GO terms: None is not a valid term
#959
aldendirks
closed
9 months ago
6
funannotate sort line 37 minlen > 0
#958
ferninfm
opened
9 months ago
2
Test dataset not working
#957
gubrins
opened
9 months ago
1
Splice site validations failed in training/pasa step
#956
melop
opened
10 months ago
5
Difference between clusters and smCOGs from antismash?
#955
lukaskon
opened
10 months ago
4
Genome assembly error: headers contain more characters than the max (16), reformat headers to continue.
#954
Panda-smile
opened
10 months ago
0
Fuannotate comapre Aborted
#953
SolayMane
opened
10 months ago
3
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