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nextgenusfs
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funannotate
Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
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Bugfix #951
#952
hyphaltip
closed
10 months ago
0
funannotate annotate gb2parts()
#951
SolayMane
opened
10 months ago
7
funannotate update errors out at SeqClean step
#950
Nicholas-Kron
closed
10 months ago
1
Diamond CMD ERROR when using funannotate annotate
#949
lichen-fungus
opened
10 months ago
1
funannotate predict did not incoporate UTRs from PASA
#948
Nicholas-Kron
closed
10 months ago
4
Funannotate compare "error, is not a funannotate folder and does not seem to be a GenBank file"
#947
Laura-CE-Campbell
opened
10 months ago
1
CMD ERROR: stringtie -p 35 ./train/training/hisat2.coordSorted.bam
#946
anilchauhanhp9
opened
10 months ago
0
I tried to run Funannotate functional annotation in usegalaxy.org.au, program has got run successfully. However the files are not getting generated in history and its marked error with red colour.
#945
BharathBioinfo
closed
8 months ago
1
funannotate on wsl1 wsl2? real?
#944
MichaelFokinNZ
opened
11 months ago
0
funannotate annotate ValueError: invalid literal for int() with base 10: 'ver'
#943
lichen-fungus
closed
11 months ago
7
Need help to run it in slurm
#942
Nitin123-4
opened
11 months ago
5
soft-masking completes, but with some suspicous info in mask.log
#941
igwill
opened
11 months ago
1
Augustus error: Unknown parameter: "softmasking".
#940
Arkadiy-Garber
closed
11 months ago
3
Can I skip signalP prediction step in functional annotation?
#939
kushalsuryamohan
opened
11 months ago
2
annotate step not combining everything after parsing interproscan XML
#938
benyoung93
opened
11 months ago
8
Util gbk2parts add cds dump
#937
hyphaltip
closed
11 months ago
0
Feature: utils gbk2parts dump same funannotate output files
#936
hyphaltip
opened
11 months ago
0
functional comparison query
#935
hassantarabai
closed
11 months ago
0
We need YOUR help to improve gene names/product descriptions
#934
alexvasilikop
opened
11 months ago
1
Adding functional annotation to reduced gff3 file
#933
alexvasilikop
opened
11 months ago
2
funannotate annotate: disappearing iprscan.xml and phobius problems
#932
igwill
closed
11 months ago
3
funannotate update - antiSMASH: Multiple CDS features have the same location ERROR
#931
vikll
opened
12 months ago
2
funannotate train: PASA fail with congener RNAseq reads
#930
igwill
closed
12 months ago
2
Two step repeat masking (partial RepeatModeler output + tantan), reasonable approach?
#929
igwill
opened
1 year ago
0
Lower than expected BUSCO score for funannotate predict-derived gene models compared to genome and transcriptome BUSCO scores
#928
kushalsuryamohan
opened
1 year ago
10
eggnog-mapper version parsing broken for 2.11.x versions
#927
hyphaltip
closed
1 year ago
1
Add additional annotations with funannotate
#926
lichen-fungus
closed
11 months ago
2
Funannotate Run time + Perl error
#925
ChuChuChaddy
opened
1 year ago
5
Transcription factor identification
#924
skylerhar1
closed
1 year ago
3
Evaluation of gene models from funannotate
#923
kushalsuryamohan
closed
1 year ago
3
the value of 'augustus' is set as 'pasa' in the log of predict
#922
sqwwww
opened
1 year ago
7
Funannotate predict error
#921
kushalsuryamohan
closed
1 year ago
7
Species is recognized as "anidulans"?
#920
lukaskon
opened
1 year ago
3
funannotate compare fails at proteinortho
#919
xvazquezc
opened
1 year ago
2
DBD::SQLite::st execute failed: database is locked
#918
jimie0311
opened
1 year ago
1
TypeError: list indices must be integers or slices, not NoneType
#917
Danhfg
opened
1 year ago
3
pasa-assembly problem
#916
DiegoSafian
opened
1 year ago
2
ERROR: dependencies not installed
#915
lukaskon
closed
1 year ago
3
Funannotate predict fails at stage CodingQuarry (only for some genomes)
#914
yvetboele
opened
1 year ago
5
Evidence modeler has failed, exiting
#913
mpalmada
closed
1 year ago
8
GenBank submission tbl2asn to table2asn
#912
pascalangst
opened
1 year ago
13
How to generate funannotate gbk file !
#911
zhangwenda0518
closed
1 year ago
1
KeyError: 'antismash_generation'
#910
JWDebler
opened
1 year ago
2
UnboundLocalError: local variable 'Transcript' referenced before assignment in funannotate annotate
#909
josieparis
closed
1 year ago
5
Request add CodingQuarry Pathogen mode for post-fungal gene annotation, 2nd round RIP/effector-like gene predictionss
#908
JamesHane
opened
1 year ago
1
add contig_window parameter to funannotate-p2g.py
#907
photocyte
closed
1 year ago
1
Fix compatibility issue with pandas >=2
#906
abretaud
closed
1 year ago
0
funannotate annotate with interproscan input: KeyError: 'FUNANNOTATE_DB'
#905
abretaud
opened
1 year ago
4
Is it possible to add new sequences to an existing "compare" result?
#904
vladimirg
opened
1 year ago
1
test run fails with "AttributeError: module 'numpy' has no attribute 'float' ".
#903
webbchen
closed
1 year ago
2
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