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nextgenusfs
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funannotate
Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
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Pasa gff not working
#902
caioald
closed
1 year ago
2
Do I need to “train” one by one?
#901
maruiqi0710
opened
1 year ago
4
Ploidy question
#900
Niohuruzh
opened
1 year ago
4
Problems in funannotate predict with AUGUSTUS_CONFIG_PATH
#899
DiegoSafian
opened
1 year ago
6
FUN gene ID numbering seems inconsistent
#898
DaRinker
opened
1 year ago
7
Trinity failure due to samtools libtinfow issue
#897
kate-stankiewicz
closed
1 year ago
4
funannotate sort --minlen not working
#896
abretaud
closed
1 year ago
2
AUGUSTUS training failed,size 108 is greater than the number of genes in file
#895
Wwwwwwwyc
opened
1 year ago
3
Funannotate fails to retrieve results from BUSCO
#894
lalalagartija
opened
1 year ago
2
How to merge xml files?
#893
maruiqi0710
opened
1 year ago
1
Empty eggnogg.annotations.txt - EggNog Parse ERROR
#892
CesarBertinetti
closed
1 year ago
15
Trinity fails at read normalization of paired end data
#891
yvetboele
closed
1 year ago
3
Inconsistent reslults with dbCAN
#890
caonetto
closed
1 year ago
2
Problem plotting summary charts
#889
Cat4Lion
opened
1 year ago
0
Could I use “funannotate train and update” with RNA SRA of closely related species (strain)?
#888
maruiqi0710
opened
1 year ago
1
returned non-zero exit status 1 in funannotate update
#887
hassantarabai
opened
1 year ago
2
[QUESTION] (not a bug) How can I change the locus ID's after the fact?
#886
DaRinker
closed
1 year ago
1
New 1.8.14 release?
#885
abretaud
closed
1 year ago
8
xml.etree.ElementTree.ParseError
#884
hassantarabai
closed
1 year ago
3
Error with gmap when checking dependencies
#883
tjhinet
opened
1 year ago
2
PASA failure when running as job on cluster (but will run okay interactively)
#882
DaRinker
opened
1 year ago
4
funannotate setup database stuck on dbCAN
#881
hassantarabai
closed
1 year ago
1
Use several bam files for gene prediction
#880
lalalagartija
opened
1 year ago
3
test errors
#879
zhangwenda0518
closed
1 year ago
7
Results empty funannotate annotate
#878
MesYosra
opened
1 year ago
3
Funannotate cannot read symlink to database
#877
minhtrung1997
opened
1 year ago
0
remote AntiSMASH fails with duplicate CDS features
#876
alexweisberg
opened
1 year ago
1
Feature Request: an option to funannotate annotate to provide pre-generated BUSCOs
#875
docmanny
closed
1 year ago
4
funannotate update giving me "ERROR: FASTQ headers are not properly paired"
#874
DaRinker
closed
1 year ago
7
Malformed GFF file for funannotate annotate
#873
MesYosra
closed
1 year ago
2
FileNotFoundError: [Errno 2] No such file or directory: 'test-predict_eccf5e84-d7e2-4805-bf8c-64f475650a4d/annotate/predict_results/Awesome_testicus.gff3'
#872
ZeweiSong
opened
1 year ago
15
Facing problem in assigning gene name and protein name
#871
DrNavi
closed
1 year ago
3
funannotate annotation error | TypeError: list indices must be integers or slices, not NoneType
#870
hafizmtalha
closed
1 year ago
11
Modifying CDS of curated annotations
#869
JC-therea
closed
1 year ago
2
Update emapper version parser
#868
mdziurzynski
closed
1 year ago
1
FileNotFoundError: [Errno 2] No such file or directory:masked_pasa.pasa_assemblies_described.txt during funannotate train step
#867
maysonlin
opened
1 year ago
0
Which is the ultimate Augustus version that works with the latest funannotate?
#866
BrigidaGallone
closed
1 year ago
2
merge from Iprscan re-parse for GO terms
#865
hyphaltip
closed
1 year ago
1
ERROR 30: creating acceptor sites. Not enough data or check input files for wrong format.
#864
fereyj
closed
1 year ago
20
Process stalls indefinitely when running predict
#863
fereyj
closed
1 year ago
2
ERROR: augustus --proteinprofile test failed, likely a compilation error.
#862
charlesfeigin
closed
1 year ago
11
flake8 fixes
#861
hyphaltip
closed
1 year ago
0
Computational requirements when picking up funannotate train after timeout during PASA step
#860
janniksven
closed
1 year ago
3
gff2tbl error
#859
lalalagartija
opened
1 year ago
1
Hi,
#858
max-hence
closed
1 year ago
0
funannotate test for --pasa_db
#857
ARW-UBT
opened
1 year ago
1
Problems with funannotate update
#856
DiegoSafian
closed
1 year ago
3
'funannotate predict' status unclear
#855
ARW-UBT
closed
1 year ago
9
Convert BAM to GFF format
#854
cberthelier
closed
1 year ago
2
Excessive file generation
#853
drabe004
opened
1 year ago
11
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