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Create a demos section in the website for hosted demonstrations of client and/or server side software. Demos should be open source and available for reuse, use manifests from multiple sites, use the …
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A new repository should be created that serves up a minimum viable reference implementation of the API.
- As a possible implementation detail - it could serve data from the usual file formats (BAM, VC…
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Consider a researcher who writes a script against the GA4GH APIs, accesses data and publishes the results. The current APIs do not guarantee that subsequent researchers will get the same result when r…
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Hello,
We recently found that on upgrading to irods 3.3.1 that running iput -r against a local directory with subdirectories could hit a race condition. Essentially files were being added before the …
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The Cinnamon process is growing in memory use over time. Here are some initial memory observations for this process. The measurements below are done using a simple readout from the supplied system m…
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Hi Everyone,
This is just a friendly suggestion, but could we have in each of the (non-method) data schemas (i.e. `reads.avdl`, `variants.avdl`, etc.), a record as follows that stores the URI to a th…
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In the current [schema](https://github.com/ga4gh/ReadTaskTeam/blob/master/src/main/resources/avro/ga4gh.avdl), ReadGroup is an attribute of a Read only accessible with the `tags` field of Read (line 1…
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See https://github.com/mathieuancelin/play2-couchbase/issues/33 for background by @kieranbenton
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It is not clear to me the relationship between data types described in [ga4gh.avdl](https://github.com/ga4gh/ReadTaskTeam/blob/master/src/main/resources/avro/ga4gh.avdl). More specifically:
- A ReadSe…
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It's too confusing to find, and to navigate between:
- the top-level site at https://github.com/ga4gh
- the top-level documentation at http://ga4gh.github.io/
- documentation for individual teams like…